Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0194
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875...    29   3.1  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   9.4  
09_02_0581 + 10890635-10890725,10891051-10891140,10892585-108928...    28   9.4  
02_05_0977 - 33239887-33240566,33241010-33241985                       28   9.4  
02_05_0948 - 33003921-33006269                                         28   9.4  
02_02_0537 + 11308195-11309667                                         28   9.4  
01_05_0645 - 23899579-23904483                                         28   9.4  

>09_04_0532 +
           18386593-18386722,18386826-18386900,18387098-18387510,
           18387682-18387688,18387944-18388005,18388046-18388341,
           18388456-18388813,18388916-18389491,18389956-18390231
          Length = 730

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 197 CSTSYGTHT--LSHWARAALTRASGFYIYIRSRADKTMWKVGCSDSVLGNFW 346
           C  +YG +   LS W R  +T    ++ + R   ++ +WK+G   + L  FW
Sbjct: 610 CGWAYGMNVFDLSEWRRQKITDV--YHNWQRLNENRILWKLGTLPAGLVTFW 659


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 591  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 683
            ILH HPN         TQP   C  C Y+++
Sbjct: 1015 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1045


>09_02_0581 +
           10890635-10890725,10891051-10891140,10892585-10892857,
           10893037-10893054,10893458-10893526,10893991-10894042,
           10894706-10895093
          Length = 326

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 137 QLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALTRASGFYIYIRSRADKT 301
           +L  S EVS+ W    ++L+C+T  GT   +  A  AL + S       +RAD T
Sbjct: 249 RLRGSYEVSSMWKVVDTALLCTTDIGTQRPTMAAVVALLKES--LALEETRADST 301


>02_05_0977 - 33239887-33240566,33241010-33241985
          Length = 551

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 83  SPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALT 253
           SPA      F  WV KH + + SS  S   + +  +++     GTHT    A AA+T
Sbjct: 198 SPAPPSRAAFPSWVTKHDRHLLSSPAS---TIAPDAVVALDGSGTHTSISDAIAAVT 251


>02_05_0948 - 33003921-33006269
          Length = 782

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
 Frame = +2

Query: 173 SHSASSLICSTSYGTHTLSHWARAALTRASGFYIYIRSRAD-----------KTMWKVGC 319
           +  + S + +  +GTHT S  A + +T A GF+ Y R +A            K  WK GC
Sbjct: 213 TEESKSPLDTEGHGTHTASTAAGSPVTGA-GFFDYARGQAVGMSPAAHIAAYKICWKSGC 271

Query: 320 SDS 328
            DS
Sbjct: 272 YDS 274


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 591 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 683
           ILH HPN         TQP   C  C Y+++
Sbjct: 173 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 203


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 591  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 683
            ILH HPN         TQP   C  C Y+++
Sbjct: 1292 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,346,830
Number of Sequences: 37544
Number of extensions: 449397
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)