Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0194
         (766 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041379-1|AAH41379.1|  240|Homo sapiens transmembrane protein 6...    31   4.5  
AL078638-8|CAI41062.1|  323|Homo sapiens four and a half LIM dom...    31   4.5  
AF063002-1|AAC72886.1|  323|Homo sapiens LIM protein SLIMMER pro...    31   4.5  
AK131253-1|BAD18432.1|  169|Homo sapiens protein ( Homo sapiens ...    30   7.9  

>BC041379-1|AAH41379.1|  240|Homo sapiens transmembrane protein 65
           protein.
          Length = 240

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 186 PASSALPRMVPTLCHTGRGPLSLAPP 263
           PA++A PR  P+ C  GRG L+LAPP
Sbjct: 20  PAAAAAPRP-PSWCCCGRGLLALAPP 44


>AL078638-8|CAI41062.1|  323|Homo sapiens four and a half LIM
           domains 1 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 162 RLVGRIQHPASSALPRMVPTLCHTGRGPLSLAPPVFIYTLGVGQTRPC 305
           R V R+ HP S A     P +CH  R PL+L P   +     G  R C
Sbjct: 232 RTVSRVSHPVSKARK---PPVCHGKRLPLTLFPSANLRGRHPGGERTC 276


>AF063002-1|AAC72886.1|  323|Homo sapiens LIM protein SLIMMER
           protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 162 RLVGRIQHPASSALPRMVPTLCHTGRGPLSLAPPVFIYTLGVGQTRPC 305
           R V R+ HP S A     P +CH  R PL+L P   +     G  R C
Sbjct: 232 RTVSRVSHPVSKARK---PPVCHGKRLPLTLFPSANLRGRHPGGERTC 276


>AK131253-1|BAD18432.1|  169|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16182 fis, clone BRTHA2002133. ).
          Length = 169

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 402 GLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALL 283
           G  I +QK++ FY+  +N  K    +  H  +H++LS +L
Sbjct: 117 GYKINLQKSVHFYTLTVNFLKKKLRKQSHLQYHLLLSKIL 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,908,804
Number of Sequences: 237096
Number of extensions: 2650103
Number of successful extensions: 8962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8962
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)