Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0194
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   1.9  
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    29   4.5  
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    29   4.5  
At1g43680.1 68414.m05018 hypothetical protein                          28   7.8  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 110 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 202
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 249 SLAPPVFIYTLGV---GQT--RPCGKLDALIQFWVIFGYSC 356
           SL PP+ +YT+G+   G T    C  L  L+  W I G  C
Sbjct: 184 SLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYC 224


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 249 SLAPPVFIYTLGV---GQT--RPCGKLDALIQFWVIFGYSC 356
           SL PP+ +YT+G+   G T    C  L  L+  W I G  C
Sbjct: 184 SLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYC 224


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 418 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 302
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,747
Number of Sequences: 28952
Number of extensions: 370783
Number of successful extensions: 884
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)