Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0193
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   2.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   8.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.3  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 506 TTTNRNEAVEQMSQVRNRNAVHRE 435
           TTTN+NE++   S  RNR  + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 431 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 330
           S  + PFD +S+   S+  LEGL    N+    P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 321 SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFP 440
           S L PLD+S  EK         K      +E G+YP++ P
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESP 380


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = -1

Query: 200 ALPAPLQTSFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRS 24
           A P    +S+LSS ++  S++SP  +   T TS  S L TS + + ++  +ST +++ S
Sbjct: 200 AAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTS--SSLSTSSIPSTSSSSSSTSSSLSS 256


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 429 RKFPVDRVPVPNLTHLLYGFIPI 497
           RK  V+ VP P L   + GF P+
Sbjct: 251 RKLAVNMVPFPRLHFFMVGFAPL 273


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 255 LCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 380
           +C ++   +S  ++ VVA  D   ++ +DY +      FK+T
Sbjct: 868 ICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,089
Number of Sequences: 5004
Number of extensions: 46657
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)