Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0193
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 1.6
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 2.8
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 29 2.8
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 29 3.7
02_01_0679 - 5048653-5051394 29 3.7
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 4.8
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 28 4.8
03_05_0163 - 21424010-21424057,21424310-21424417,21424557-214246... 28 4.8
02_01_0757 - 5622522-5622783,5622803-5622924 28 4.8
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 6.4
05_01_0129 - 872127-872681,872762-873070,873180-873347 27 8.5
03_02_0361 - 7800879-7801484,7801614-7802513 27 8.5
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 401 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 490
L+R +GC + VPC P SG+E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 460 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 365
G GT S G+ YT H K P +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -1
Query: 569 CMNVVVLENCPQFLSNCH*C---LTTTNRNEAVEQMSQVRNRNAVHRELSRIHTP 414
C N + L N L NCH L T + A S+ RN RE S TP
Sbjct: 619 CTNEIPLPNAGYHLYNCHELTIPLQTIEESSAGGAYSETRNMTTNERECSSSSTP 673
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 519 SLMPHHHKSE*SRRANESGSEPERGPQGTF*DTHPIRRSKRPPLFP 382
S +P H S ++N + EPE G G DT R+S+R P P
Sbjct: 104 SRLPTHSSSRDETKSNHTAHEPESG--GDADDTKGDRQSQRVPKSP 147
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 446 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 303
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 426 PRKFPVDRVPVPNLTHLLYGFIPICGG 506
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 228 GRKIPDAGRLCNSDGCSSSEGVEIVV 305
G +P A LCN++ CSS G + +V
Sbjct: 109 GAFLPSAPALCNTESCSSMNGTQHLV 134
>03_05_0163 -
21424010-21424057,21424310-21424417,21424557-21424643,
21425245-21425364,21425467-21425565,21426409-21426522,
21427041-21427094,21427202-21427296,21427650-21427785,
21428036-21428292,21428852-21429575
Length = 613
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = -2
Query: 310 SATTISTPSLELHPSELQ----SRPASGIFRPSSL*KRPMWR-CRHRSRLPSYRA 161
S ++++ P L + P+ S SG+ +P ++ RP+W+ R R+P+ RA
Sbjct: 36 SFSSLAAPPLPIPPASAAAANLSGAVSGVAQPETMYNRPIWKPPPRRERMPAPRA 90
>02_01_0757 - 5622522-5622783,5622803-5622924
Length = 127
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 328 KWLPSVSATTISTPSLELHPSELQSRPASGI 236
KW+PS+S I++P L+L+ + +G+
Sbjct: 22 KWIPSLSRKPIASPELQLYRHMISRNHVTGV 52
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 131 PATRPTSPESCSIRRKSGAVPAAPHRPLSK 220
P T+PT+P S + S P P +P+ +
Sbjct: 167 PTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 384 GKVVGAYFVEWGVYPRKFPVDRVPV 458
G+ G + V WG+ R+ PV +PV
Sbjct: 78 GQAAGNFLVAWGLASRRLPVAPLPV 102
>03_02_0361 - 7800879-7801484,7801614-7802513
Length = 501
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 174 GSLERCRQRHIGRFQSEEGRKIPDAGRLCNSDGCS 278
G+ QRH F + R +PDA R C DG S
Sbjct: 82 GAARDILQRHDAAFSA---RSVPDAARACGHDGFS 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,594
Number of Sequences: 37544
Number of extensions: 349044
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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