Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0193
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   27   8.7  

>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 449 AVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL-TNRIIER 333
           ++H  + + H   +E     +SR +LEG+++L TNRI+ R
Sbjct: 2   SIHEHIKQ-HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/115 (22%), Positives = 49/115 (42%)
 Frame = -1

Query: 353 TNRIIERPQMATISVSYYDFDALARAASV*VAESTCIWYLPPFFTLKAADVALPAPLQTS 174
           T  +  R  ++T S S     +LA++++V V+      Y       K++ VA+      S
Sbjct: 4   TVAVAARRSLSTASSSVLHSSSLAKSSTVAVSAQAHSQYCTVQALPKSSTVAVAVQRSLS 63

Query: 173 FLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRF 9
             SS  L  S  +   T  +    +     +S L +++   +ST+A    P P++
Sbjct: 64  TASSSVLHSSCLAKSSTVAVAARRSLRTASSSVLHSLSLAKSSTVAVSAQPHPQY 118


>SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 207 GRFQSEEGRKIPDAGRLCNSDGCSSSEGVEIVVADTDGSHLRPL 338
           G+F S+ GRK  + G   +  G + ++  ++VV D D + ++ L
Sbjct: 318 GKFVSKIGRKGSENGNFLHPSGLALNQDGDLVVIDKDNNRVQVL 361


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 237  IPDAGRLCNSDGCSSSEGVEIVVADTD---GSHLRPLDYSIGEKNKPFKQTSGKVVG 398
            I D G+    D CS SE ++ +  ++D    S  +P   SI  ++K F+Q + + +G
Sbjct: 2446 ISDVGKKAIIDACSESESLQHLFHESDPILNSCSKPHSLSICIRDKLFRQKTTEKLG 2502


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 429 RKFPVDRVPVPNLTHLLYGFIPI----CGGEASMTV*KKLRAVFKHYNV 563
           RK  V+ +P P L   + GF P+    C    ++TV    +A+F + N+
Sbjct: 156 RKLAVNMIPYPRLHFFMPGFAPLTSRECVSYRALTVADLTQAIFDNKNL 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,654
Number of Sequences: 59808
Number of extensions: 360934
Number of successful extensions: 1077
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)