Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0193
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   4.3  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   4.3  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   4.3  
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   5.7  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    27   10.0 

>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 509  LTTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 378
            L   NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1297 LLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 509  LTTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 378
            L   NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1297 LLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 509  LTTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 378
            L   NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1297 LLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 185 LQTSFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRSPQP 15
           +Q +   S T+D S +  +   +L E       +++W     A L S    +RSP P
Sbjct: 97  VQNATTFSATIDSSTSQKLSQIELPEHLTVPSAISTWFPVQYAVLPSLFFEIRSPPP 153


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 43  VEVNQAATAYNQLVTKKDAADVSVNWNVW 129
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate receptor
            family (ampa)protein 4 protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 119  GTCGPATRPTSPESCSIRRKSGAVPAAPHRPLSK*RR 229
            GT     RP S     +RR S  +PAA H  LS+ R+
Sbjct: 911  GTPISRDRPPSISRAGLRRLSRMLPAATHEQLSRFRQ 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,439
Number of Sequences: 27780
Number of extensions: 268113
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)