Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0193
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.97 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   6.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 110 ETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRFGF 3
           +    +F+VTSWL  + +++   I  V +P+ R  F
Sbjct: 653 QPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFRKAF 688


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 480 YGFIPICGGEASMTV*KKLRAVFKH 554
           YGF  +  G +S T    ++ +FK+
Sbjct: 64  YGFFGVAPGTSSATNPNAMKTIFKN 88


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 19  WGERTFAIV-EVNQAATAYNQLVTK 90
           WG++TF I+ + N   ++ N +  K
Sbjct: 70  WGDKTFVIIMKFNGVPSSLNVITNK 94


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = -1

Query: 560 VVVLENCPQFLSNCH*CLTTTNRNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSAHHFSR 381
           V+ L   P FL   H C  T +R   V  M  V   + ++ ++ +    F E  A  ++ 
Sbjct: 37  VLALSTKPPFLVQLHSCFQTMDRLYFV--MEYVNGGDLMY-QIQQC-GKFKEPVAVFYAS 92

Query: 380 SLLEGLIFLTNR 345
            +  GL FL  R
Sbjct: 93  EIAIGLFFLHGR 104


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 304  TTISTPSLELHPSELQSRPASGIFRPSSL*KRPMWR 197
            TT+S+ S E H   L     S I    S  +R  WR
Sbjct: 1316 TTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAWR 1351


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 411 RRSKRPPLFPKSA*RAYFSHQ*NNREASNGYHQC 310
           RRS      P  +      HQ +N+E S   H C
Sbjct: 35  RRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHC 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,784
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)