Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0193
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    29   1.8  
At2g31800.1 68415.m03882 ankyrin protein kinase, putative simila...    29   2.3  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    28   5.4  
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica...    27   7.1  
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    27   7.1  
At5g26820.1 68418.m03200 ferroportin-related low similarity to f...    27   9.4  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   9.4  

>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +3

Query: 240 PDAGRLCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNK 365
           PD G LC  D    SE VE VV    G HL      I + NK
Sbjct: 865 PDLGTLCIKDQTLPSESVEKVVGWAFGHHLMICTEPIVKDNK 906


>At2g31800.1 68415.m03882 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674; contains Pfam profile PF00023:
           Ankyrin repeat; identical to cDNA calcineurin B-like
           protein 10 (CBL10) GI:29150247; blastp match of 67%
           identity and 1.9e-200 P-value to
           GP|18700701|gb|AAL78674.1|AF458699_1|AF458699
           ankyrin-kinase {Medicago truncatula}
          Length = 476

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 328 KWLPSVSATTISTPSLELHPSELQSRPASGI 236
           K  P V A     P  EL+P ELQ R A GI
Sbjct: 171 KRTPMVVANPREVPEYELNPQELQVRKADGI 201


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 430 LGYTPHSTK*APTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSL---ELHPSEL 260
           +GY+ +S +   +  P +C+ G F+   E  R   +   V    IS P L    +HP  L
Sbjct: 243 VGYSINSDRDICSACPSLCIAGFFYECSE--RNCDFRLHVQCARISEPLLHPSHMHPLFL 300

Query: 259 QSRP 248
            S+P
Sbjct: 301 TSKP 304


>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 380

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 578 HGRCMNVVVLENCPQFLSNCH*CLTTTNRNEAVEQMSQVRNRN 450
           HG  ++   + NC   L NC     T N N +V+  S     N
Sbjct: 313 HG-LVDSATINNCNTILENCRNTSVTNNNNNSVDHPSDSNTNN 354


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 578 HGRCMNVVVLENCPQFLSNCH*CLTTTNRNEAVEQMSQVRNRN 450
           HG  ++   + NC   L NC     T N N +V+  S     N
Sbjct: 373 HG-LVDSATINNCNTILENCRNTSVTNNNNNSVDHPSDSNTNN 414


>At5g26820.1 68418.m03200 ferroportin-related low similarity to
           ferroportin1 [Danio rerio] GI:7109245
          Length = 598

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 197 LPAPLQTSFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL*AV 63
           +P  +  + + +    LSA   +H + +  TSA+S L+  W  A+
Sbjct: 212 VPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSASSILLQPWFFAL 256


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 321 YHQCQLLRFRRPR*SCIRLSCRVDLHL 241
           Y     L+F+R   SC++L+C +  HL
Sbjct: 51  YRNVSQLQFKRENSSCLKLACALPSHL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,999
Number of Sequences: 28952
Number of extensions: 259942
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)