Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.002
UniRef50_O75581 Cluster: Low-density lipoprotein receptor-relate...    34   2.7  
UniRef50_UPI0000F2BED6 Cluster: PREDICTED: similar to zinc finge...    33   6.3  
UniRef50_Q6D388 Cluster: Putative exported protein; n=1; Pectoba...    33   8.3  
UniRef50_P74311 Cluster: Uncharacterized protein slr0944; n=10; ...    33   8.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +2

Query: 290 FLLLRLVDELTAHLVLSGYWS 352
           FLLLR VDELTAHLVLSGYWS
Sbjct: 154 FLLLRWVDELTAHLVLSGYWS 174


>UniRef50_O75581 Cluster: Low-density lipoprotein receptor-related
            protein 6 precursor; n=30; Deuterostomia|Rep: Low-density
            lipoprotein receptor-related protein 6 precursor - Homo
            sapiens (Human)
          Length = 1613

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 372  KCATHLET*LLRSQYSYNDCPTLQTETHYCFTAEIGCVVVPTRAD 506
            +C+  +   LL+ + S  + PT   +   CFT EI C+ V  R D
Sbjct: 1227 RCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEIDCIPVAWRCD 1271


>UniRef50_UPI0000F2BED6 Cluster: PREDICTED: similar to zinc finger
           protein 452; n=2; Monodelphis domestica|Rep: PREDICTED:
           similar to zinc finger protein 452 - Monodelphis
           domestica
          Length = 419

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +1

Query: 136 HMRRISSQLKNESSKPFHLQKSSEVTHTQNT 228
           +++ I +QLK ES +P+HLQ ++E + T+ T
Sbjct: 378 NIQPIETQLKCESKEPYHLQNATETSDTRRT 408


>UniRef50_Q6D388 Cluster: Putative exported protein; n=1;
           Pectobacterium atrosepticum|Rep: Putative exported
           protein - Erwinia carotovora subsp. atroseptica
           (Pectobacterium atrosepticum)
          Length = 116

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -2

Query: 507 SLRGWVPPRSLFLP*SSNAFRFEGWGSRCNYTETLEVMSQGGWRIYV 367
           S   W P R  F       F+ + WG+ CN  E +    QG W   V
Sbjct: 69  SKESWKPVRLRFGSSFETTFKSKNWGAACNVLEIIVETDQGIWEFQV 115


>UniRef50_P74311 Cluster: Uncharacterized protein slr0944; n=10;
           Cyanobacteria|Rep: Uncharacterized protein slr0944 -
           Synechocystis sp. (strain PCC 6803)
          Length = 383

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 572 FKIKYVIKITLMLIFTGGGPLGVCAGGYHHAAYFCREAVMRFGLKGGAVVVTIL 411
           F I YV+ + L L +    P  +  G  +H       AVM FGL  GA + T++
Sbjct: 287 FLITYVLGLKLKLSYEDAAPAALI-GASNHFEVAIATAVMLFGLNSGAALATVV 339


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,512,327
Number of Sequences: 1657284
Number of extensions: 12457219
Number of successful extensions: 27232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27218
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)