Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435     29   4.5  
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184     28   5.9  
02_03_0151 - 15759254-15760459                                         28   7.8  

>09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435
          Length = 452

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 519 WTSGSLRGWVPPRSLFLP*SSNAFRFEGWGS 427
           W+ GSL+GW     LF P + +   F  W S
Sbjct: 417 WSRGSLKGWDVDPLLFQPSTVDKLSFHDWQS 447


>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
          Length = 544

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 409 LSIVTTTAPPFKPKRITASRQK*AAWWYPPAQTPRGPPP 525
           L+   ++AP F P+R  +     A W Y P Q  +  PP
Sbjct: 252 LTEAASSAPAFPPRRPNSWAPSPAPWPYTPGQQAKFSPP 290


>02_03_0151 - 15759254-15760459
          Length = 401

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 519 WTSGSLRGWVPPRSLFLP*SSNAFRFEGWGSRCNYT 412
           W   + R W P R L LP  +N    E W + C  T
Sbjct: 211 WFDPAARQWGPARQLQLPEGNNTASVESWAA-CGVT 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,073
Number of Sequences: 37544
Number of extensions: 360781
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)