Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)                      29   3.4  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     29   4.5  
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 28   6.0  

>SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 130 WDHMRRISSQLKNESSKPFHLQKSSEVTHTQNTTTSCFCQLTYRLY 267
           W+H R  S+ L   S+K F L+ SSEV HT        C+++Y L+
Sbjct: 292 WNHNR--SNHLALGSNKKFILKDSSEVLHTLLRDGES-CRISYSLH 334


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 435 WGSRCNYTETLEVMSQGGWRIYVID 361
           WGS C +++ + V + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 493 PPAQTPRGPPPVKININVIFITYLI 567
           P    P GPPP++I++ V   T+LI
Sbjct: 523 PTVVEPTGPPPIRISVEVQGKTFLI 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,107
Number of Sequences: 59808
Number of extensions: 403706
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)