Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein...    34   0.40 
BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein...    34   0.40 
AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related pr...    34   0.40 
AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein...    34   0.40 

>BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein
            receptor-related protein 6 protein.
          Length = 1613

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 372  KCATHLET*LLRSQYSYNDCPTLQTETHYCFTAEIGCVVVPTRAD 506
            +C+  +   LL+ + S  + PT   +   CFT EI C+ V  R D
Sbjct: 1227 RCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEIDCIPVAWRCD 1271


>BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein
            receptor-related protein 6 protein.
          Length = 1613

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 372  KCATHLET*LLRSQYSYNDCPTLQTETHYCFTAEIGCVVVPTRAD 506
            +C+  +   LL+ + S  + PT   +   CFT EI C+ V  R D
Sbjct: 1227 RCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEIDCIPVAWRCD 1271


>AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related protein
            6 protein.
          Length = 1613

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 372  KCATHLET*LLRSQYSYNDCPTLQTETHYCFTAEIGCVVVPTRAD 506
            +C+  +   LL+ + S  + PT   +   CFT EI C+ V  R D
Sbjct: 1227 RCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEIDCIPVAWRCD 1271


>AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein
            receptor-related protein 6 variant protein.
          Length = 1477

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 372  KCATHLET*LLRSQYSYNDCPTLQTETHYCFTAEIGCVVVPTRAD 506
            +C+  +   LL+ + S  + PT   +   CFT EI C+ V  R D
Sbjct: 1091 RCSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEIDCIPVAWRCD 1135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,668,332
Number of Sequences: 237096
Number of extensions: 2068907
Number of successful extensions: 3590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3587
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)