Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        28   6.9  
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    28   6.9  

>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 124 FKWDHMRRISSQLKNESSKPFHLQKSSE 207
           F W  +  I SQL+N  SK ++L KS++
Sbjct: 442 FSWSKVANIQSQLENLISKNYYLNKSAK 469


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 490 YPPAQTPRGPPPVKININVIFITYLILNLL 579
           YP        P  K+ IN IFIT  +LN+L
Sbjct: 174 YPQMSAMATSPSSKLRINYIFITINVLNVL 203


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical protein
            F29D10.4 protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 493  PPAQTPRGPPPVKININVIFI 555
            PPA+ P+ PPP K  +N + I
Sbjct: 1030 PPARGPKPPPPAKPKLNPVVI 1050


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 493  PPAQTPRGPPPVKININVIFI 555
            PPA+ P+ PPP K  +N + I
Sbjct: 966  PPARGPKPPPPAKPKLNPVVI 986


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 518 GPLGVCAGGYHHAAYFCREAVMRFGLKGG 432
           GPLG   GG  H   F R+   RFG  GG
Sbjct: 275 GPLGQPRGGGSHGRPFMRDPNGRFGGNGG 303


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 213 TYTKYNHFLFLSVDISSLL-TPV*MFFFYCLDWWTSSQ 323
           TY     FL L+   +SL+ TP+    FYC+ W T  Q
Sbjct: 8   TYFDSPEFLTLAFHTTSLIETPIHCLGFYCILWKTPEQ 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,021
Number of Sequences: 27780
Number of extensions: 315235
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)