Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0192
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.66 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 74  SQ*CVCSQIVFKSLLINNAYLI 9
           SQ  +CS +VF  +LIN  ++I
Sbjct: 767 SQLIICSGLVFVQILINGVWMI 788


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 322 CELVHQSKQ*KKNIHTG--VNRDDMSTDKNKKWLYFVYV 212
           CE++H ++  K++IH    V+     T K+   LY  Y+
Sbjct: 573 CEMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYI 611


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 157 QLKNESSKPFHLQKSSEVTHTQNTTTSCFCQLTY 258
           Q +  ++ P H+QK  ++ H  +T  S    L Y
Sbjct: 308 QRETGATVPLHMQKYVQMIHDLHTRISTAIDLGY 341


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 157 QLKNESSKPFHLQKSSEVTHTQNTTTSCFCQLTY 258
           Q +  ++ P H+QK  ++ H  +T  S    L Y
Sbjct: 308 QRETGATVPLHMQKYVQMIHDLHTRISTAIDLGY 341


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 SALS*KMNHRNRFTYKKVLR*HIHKIQPLLV 241
           S+LS K  H N   YKK+   +I+ I+ + V
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 SALS*KMNHRNRFTYKKVLR*HIHKIQPLLV 241
           S+LS K  H N   YKK+   +I+ I+ + V
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 SALS*KMNHRNRFTYKKVLR*HIHKIQPLLV 241
           S+LS K  H N   YKK+   +I+ I+ + V
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 SALS*KMNHRNRFTYKKVLR*HIHKIQPLLV 241
           S+LS K  H N   YKK+   +I+ I+ + V
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPV 113


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 SALS*KMNHRNRFTYKKVLR*HIHKIQPLLV 241
           S+LS K  H N   YKK+   +I+ I+ + V
Sbjct: 316 SSLSNKTIHNNNNNYKKLQYYNINYIEQIPV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,127
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)