Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0190
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.3  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 138 PVRIQGAHTSGPGQ*CSRFYVQELEAAL 221
           PVRI G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = -1

Query: 337 AP*PDLWVPPPRTRGIRATARPVPHDSAWFGDQPPCXXXXXXXXSWT 197
           +P P ++ PP   +     + P P  S W   Q P          W+
Sbjct: 279 SPPPHVYNPPDHIQQATPYSAPGPTYSTWSTVQTPTTVMSPTINCWS 325


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 124 HPAPSHSSLNTPTL 83
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 563 PVWSC*SPGLC 531
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,546
Number of Sequences: 336
Number of extensions: 3277
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)