Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0190
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               146   2e-35
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              36   0.040
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               35   0.053
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  30   2.0  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.6  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_35101| Best HMM Match : AT_hook (HMM E-Value=4.7)                   29   3.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   4.6  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  146 bits (353), Expect = 2e-35
 Identities = 72/141 (51%), Positives = 81/141 (57%)
 Frame = +3

Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXX 434
           AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH           
Sbjct: 61  AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFA 120

Query: 435 XXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PTKXXXXXXXXXXXXXXXXLKAWSDILKV 614
                          ARGH IEKI   P +                    + A+ D+ K 
Sbjct: 121 VCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKC 180

Query: 615 YKSQRLRAGKGKMRNRRRIQR 677
             S+++RAGKGKMRNRR + R
Sbjct: 181 IDSKKIRAGKGKMRNRRTVMR 201



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +1

Query: 73  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 252
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +3

Query: 234 GGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +3

Query: 234 GGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 319 WVPPPRTRGIRATARPVPHD 260
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246  PNQAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 365
            P  +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 982  PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 360 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 268
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 369 TYVHHDTCYRRHPDRTYGYHHHGHA 295
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_35101| Best HMM Match : AT_hook (HMM E-Value=4.7)
          Length = 221

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 RASLGCSRQSPGDQQDQTGCHLPEGASRHG 597
           RA  G SR SP D    T   LP G++R+G
Sbjct: 167 RAGSGKSRDSPNDLIADTADQLPSGSTRNG 196


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 520  GCSRQSPGDQQDQTGCHLPEGASRH 594
            G ++QSP D+Q Q G + PEG+  H
Sbjct: 1354 GETKQSPPDKQCQPGHYCPEGSGLH 1378


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 360 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIR 256
           HH  CY  H    Y Y+ H H  + + H  YP  R
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYR 51


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 348 CYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRP 253
           CYRR   R + YHHH       + +RY   RP
Sbjct: 225 CYRRR--RRHFYHHHPRRYHNHRRLRYHHHRP 254


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 140  GRGLAAPCTVSLFSEYTDTKGRATDRLI 57
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 171 PGQ*CSRFYVQELEAALLREQG-GWSPNQAESWGTGRAVARIPRVRGGGT 317
           P Q C   +    E+ +L   G G  P  AE  G     ARI  +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,872,360
Number of Sequences: 59808
Number of extensions: 455610
Number of successful extensions: 1395
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)