Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0190
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   144   7e-35
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   5.3  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   5.3  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  144 bits (348), Expect = 7e-35
 Identities = 71/143 (49%), Positives = 83/143 (58%)
 Frame = +3

Query: 249 NQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 428
           + AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH         
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 429 XXXXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PTKXXXXXXXXXXXXXXXXLKAWSDIL 608
                           QARGH+I+++   P +   K                   W+DI 
Sbjct: 121 YAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIE 180

Query: 609 KVYKSQRLRAGKGKMRNRRRIQR 677
           KVY S+R RAGKGK+RNR+  Q+
Sbjct: 181 KVYNSKRNRAGKGKLRNRQHKQK 203



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +1

Query: 73  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 324 TYGYHHHGHAEFGQQHVRYPMIRP 253
           T+GYHH+ HA   Q  +   + RP
Sbjct: 67  THGYHHNPHARLSQPDIHSAIYRP 90


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 377
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 234  GGWSPNQAESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 377
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 121 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 20
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 360 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 277
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,972,919
Number of Sequences: 27780
Number of extensions: 318791
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)