Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0190
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 133 9e-32
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 133 9e-32
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.70
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 2.1
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 2.1
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.1
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 2.8
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 2.8
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 28 4.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 4.9
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 28 4.9
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 28 4.9
At5g57500.1 68418.m07185 expressed protein 27 8.6
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 27 8.6
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 27 8.6
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 8.6
At1g76010.1 68414.m08825 expressed protein 27 8.6
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 133 bits (322), Expect = 9e-32
Identities = 68/141 (48%), Positives = 75/141 (53%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXX 434
AESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129
Query: 435 XXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PTKXXXXXXXXXXXXXXXXLKAWSDILKV 614
ARGH IE +P P + + A+ D K
Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189
Query: 615 YKSQRLRAGKGKMRNRRRIQR 677
S +R GKGKMRNRR I R
Sbjct: 190 KNSIGIRPGKGKMRNRRYISR 210
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 67 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 240
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 241 GHQT 252
GHQT
Sbjct: 65 GHQT 68
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 133 bits (322), Expect = 9e-32
Identities = 68/141 (48%), Positives = 75/141 (53%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXX 434
AESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 69 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 128
Query: 435 XXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PTKXXXXXXXXXXXXXXXXLKAWSDILKV 614
ARGH IE +P P + + A+ D K
Sbjct: 129 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 188
Query: 615 YKSQRLRAGKGKMRNRRRIQR 677
S +R GKGKMRNRR I R
Sbjct: 189 KNSIGIRPGKGKMRNRRYISR 209
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +1
Query: 58 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 231
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 232 KEAGHQT 252
K+AGHQT
Sbjct: 61 KKAGHQT 67
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 360 HHDTCYRRHPDRTYGYHHHGHAEF 289
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 207 LEAALLREQGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 377
+ AL+R + G P AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 378 TKPW 389
W
Sbjct: 135 ISKW 138
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 385 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSAWFGDQP 236
GFV + P H +P L PPP++ + + P P S+ F +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 82 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 356 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 454
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 356 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 454
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 121 GAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTR--PN---HGVPDVLL 285
G L F+A I P+L+N V N R+ V K GH R P HG P +L
Sbjct: 35 GDEDALEIRFRAVI-PNLLNTYVVPSLGNGREVTAVLKLVGHTARNIPGVFYHGTPSAIL 93
Query: 286 P 288
P
Sbjct: 94 P 94
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 133 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 228
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 321 YGYHHHGHAEFGQQHVRYPMIRPGLVTSLLAHAVGLPRVLGHRNVNIID 175
+ +HHH H + Q+H + + +P T ++ + L H ++NI+D
Sbjct: 359 HDHHHHHHQQQQQRHHAFNISQP---THPISTIISPSTSLHHASINILD 404
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 201 QELEAALLREQGGWSPNQAES-WGTGRAVARIPRVRGGGTHRS-GQGAFGNMCRGGRMFA 374
+E EA +EQG P +AES + + R R R G RS G+G N R
Sbjct: 291 EEEEAGESQEQGEEEPKEAESETNSSSSTNRRGRGRWRGRGRSRGRGPTVNE-RKPNSQD 349
Query: 375 PTKPWRRW 398
P KP R+W
Sbjct: 350 PRKPTRQW 357
>At5g57500.1 68418.m07185 expressed protein
Length = 318
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 364 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSAWFGDQPPC 230
+PP H + KA D ++ R + A+ RP+P + ++G PC
Sbjct: 163 KPPYHYVMKAD-DDTYI---RLESLVASLRPLPREDLYYGYVIPC 203
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 361 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSAWFGDQPP 233
PP +L P P + PPP R+ P P +A++ PP
Sbjct: 153 PPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 385 GFVGANIRPPR-HMLPKAP*PDLWVPPPRTRGIRATARPVPHDSAW--FGD 242
G++ A PP+ LP P W PPP++ + P+P S + FGD
Sbjct: 370 GYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 231 QGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 362
QGG Q G GR R +GGG + G G+ G+ CR G
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 231 QGGWSPNQAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 359
+GG+ Q G GR R R RGGG R G G F N G
Sbjct: 305 RGGYDGPQGRGRGRGRG--RGGRGRGGG--RGGDGGFNNRSDG 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,141
Number of Sequences: 28952
Number of extensions: 313926
Number of successful extensions: 1119
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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