Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0189
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   1.7  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.0  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.0  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 618 PVFLGF-GQSSI*KLLAWVWQFWLLL 544
           P+  GF  QSSI     W W+FW+LL
Sbjct: 184 PIISGFISQSSI----GWQWEFWILL 205


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 618 PVFLGF-GQSSI*KLLAWVWQFWLLL 544
           P+  GF  QSSI     W W+FW+LL
Sbjct: 184 PIISGFISQSSI----GWQWEFWILL 205


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 618 PVFLGF-GQSSI*KLLAWVWQFWLLL 544
           P+  GF  QSSI     W W+FW+LL
Sbjct: 184 PIISGFISQSSI----GWQWEFWILL 205


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 573 AWVWQFWLLL 544
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 573 AWVWQFWLLL 544
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,288
Number of Sequences: 5004
Number of extensions: 9639
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)