Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0189
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.4  

>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 153 CVSQNTGTCPESSCACPETSCACPETSC 236
           CVS      P  + ACP  + AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 135 CKLY*TCVSQNTGTCPESSCACPETSC 215
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 232  LVSGQAQLVSGQAQLLSGQVPVFWLT 155
            ++ GQ Q+VSG AQ + G   + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,567
Number of Sequences: 59808
Number of extensions: 77293
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)