Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0189
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   8.3  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 156 VSQNTGTCPESSCACPETSCAC 221
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPETSCAC 242
           TC     G   E SC C + SC+     C C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLC 619


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPETSCAC 242
           TC     G   E SC C + SC+     C C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLC 619


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPETSCAC 242
           TC     G   E SC C + SC+     C C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLC 619


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPETSCAC 242
           TC     G   E SC C + SC+     C C
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLC 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,051,146
Number of Sequences: 27780
Number of extensions: 62114
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)