Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0188
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.61 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   5.6  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.9  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 348 ELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN-NTTPSYEYRIMSNS 500
           +LQ QQ+   E+    +T +QQ  S    G F  N + NT P+    I+SNS
Sbjct: 114 KLQVQQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTS--ILSNS 163


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 310 APQAPPVAPRSPILQPLP 257
           AP APP+ P +PI  PLP
Sbjct: 443 APAAPPLPPSAPIAPPLP 460


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 304 QAPPVAPRSPILQPLPVSTSSFMYF 230
           +APP AP  P   PLP + SS   F
Sbjct: 804 KAPPPAPLPPPAPPLPTAMSSLQKF 828


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 327 TRHRRAHPKRPPSRPVHPSYNRCLCQPVPLCILS 226
           T+H   H  RPP  P HP ++     P P C  S
Sbjct: 166 TQHHHPHT-RPPHHPPHPHFHN-NNYPPPYCFQS 197


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +3

Query: 384  GTSTATTSQQM-------YSYKMSGGFTSNGNNTTPSYEYRIMSNSN 503
            GTST +T +Q        Y+Y  +GGFT  GNNT  +  Y   + +N
Sbjct: 1499 GTSTWSTVRQWNGSATYNYTYYTTGGFT-GGNNTNVTGLYPSSAGAN 1544


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 369 IVVGAAVHLRYLATTRHRRAHPKRPPSRPVHPSYNRCLCQPVPLCILS 226
           IV     +++++      R   K   S  + PS NR   +P+ LCI+S
Sbjct: 309 IVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDEPIHLCIMS 356


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 300 RPPSRPVHPSYNRCLCQPVPLCI 232
           +PPS P+ PS ++   QP P  I
Sbjct: 316 QPPSLPISPSTSQNSVQPFPFSI 338


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 402 TSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTRKLHLSNN---GGTH 542
           T+Q ++    +GG   N NNTT +       +S T     SN    GGT+
Sbjct: 54  TTQPLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQSNTPAFGGTN 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,499
Number of Sequences: 5004
Number of extensions: 49656
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)