Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0188
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31) 31 0.64
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 30 1.5
SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_5333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 29 3.4
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 29 3.4
SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 6.0
SB_37059| Best HMM Match : PA (HMM E-Value=0.0015) 28 7.9
SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_34011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/84 (25%), Positives = 31/84 (36%)
Frame = +3
Query: 279 ERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN 458
+ G G R++ + Q QQQ ++ QQ + +S N N
Sbjct: 14 KNGKINGCKEGREEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNLSNSSDINNN 73
Query: 459 NTTPSYEYRIMSNSNTRKLHLSNN 530
NTT S +N+N SNN
Sbjct: 74 NTTTSNNNNNNNNNNNNSSSSSNN 97
>SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 321 ASWWPSSAGEL-QHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSN 497
A++WP G+L Q + ++ T + +Q Y G T+ G TTP EYR ++
Sbjct: 114 ANYWPQGFGQLTQVYCRSTDKDRTIMSAQAQLNGLYPPKGPQTNTG--TTPIDEYRYCTH 171
Query: 498 SNTRKLHLSNNGGT 539
T+ LH N T
Sbjct: 172 RRTQVLHPKTNTST 185
>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
Length = 801
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 276 GERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSG 437
G G++GG G D++ P S+G++ +++ ++E Q+M S SG
Sbjct: 350 GGGGSSGGGGGRDDESGKRPLSSGDINMEEECDDEEEEKEEKPDQEMTSVGFSG 403
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 382 ISSFNCCWCCSSPALLGHHEASSRAPQ 302
IS F+ W C +PA GHH A +R PQ
Sbjct: 277 ISEFSLRWHCQNPAQGGHHGADAR-PQ 302
>SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 337 LGHHEASSRAPQAPPVAPRSPILQPLP 257
L EA++ P+APP+ P +P+ P+P
Sbjct: 20 LSEAEAAANPPEAPPLPPFAPLPPPVP 46
>SB_5333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +3
Query: 261 SGCRMGERGATGGAWGA-------RDDASWWPSSAGELQHQQQLNEEIGTS-TATTSQQM 416
SG ++GER WG R +A+W P +G L + + A+TS +M
Sbjct: 86 SGVKLGERNPRYEEWGHKKPGYEWRPEAAWGPKKSGSLAREPSTVPSLPCDLVASTSAKM 145
Query: 417 YSYKMSG 437
Y G
Sbjct: 146 YLASQGG 152
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 396 ATTSQQMYSYKMSGGFTSNGNNTTPS 473
+TT+ Q+YS+ S F NG NT S
Sbjct: 1931 STTADQLYSFTSSSSFNKNGLNTKVS 1956
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -2
Query: 333 ATTRHRRAHPKRPPSRPVHPSYNRC----LCQPVPLCILSFS 220
ATT + HP+R HP + C L Q PLC SF+
Sbjct: 992 ATTAYYLTHPRRDHCELTHPRRDHCVLPHLPQTRPLCTTSFT 1033
>SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 417 YSYKMSGGFTSNGNNTTPSYEY 482
Y+Y+ GG NGNN SY Y
Sbjct: 8 YNYEDVGGIVDNGNNNGGSYSY 29
>SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = +3
Query: 261 SGCRMGERGATGGAWGA-------RDDASWWPSSAGELQHQQQLNEEIGTS-TATTSQQM 416
SG ++ ER G WG R +A+W P +G L +Q + A TS +M
Sbjct: 365 SGVKLVERNLRYGEWGHKRHGYEWRPEAAWGPKRSGCLAREQSTAPSLPCDLVAATSARM 424
Query: 417 Y 419
Y
Sbjct: 425 Y 425
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 354 QHQQQLNEEIGTSTAT-TSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTRKLHLSNN 530
Q QQQ + ST T T+ Y +S +++ +N+ + +NSN+ + SNN
Sbjct: 531 QQQQQYSNSNNNSTVTVTTTATVQYSISISNSNSNSNSNSNSNSNSNNNSNSNSNNNSNN 590
Query: 531 GGTH 542
+
Sbjct: 591 NNNN 594
>SB_37059| Best HMM Match : PA (HMM E-Value=0.0015)
Length = 610
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 NGARRGALGVRATMPRGGQVAQVNCS 357
N GALGV A PR G +NC+
Sbjct: 288 NAQNNGALGVMAYAPRSGLERDLNCN 313
>SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 351 LQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTRKLHLSNN 530
LQHQ++L + T+T T+ + + T+ NT P+ ++ NT + +NN
Sbjct: 11 LQHQRRLQHQTTTTTPATTTALTTTTALTTTTALATNTAPTTTTTPNNDYNTSDDYSTNN 70
>SB_34011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 NGARRGALGVRATMPRGGQVAQVNCS 357
N GALGV A PR G +NC+
Sbjct: 105 NAQNNGALGVMAYAPRSGLERDLNCN 130
>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 333 ATTRHRRAHPKRPPSRPVHPSYN 265
AT+R R+ P PP RP PS++
Sbjct: 527 ATSRARQQPPPPPPQRPASPSHS 549
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -1
Query: 70 IFNTKQN--TLFKKHTSIPFITK 8
+F+ KQ+ TL+KKHTSI ITK
Sbjct: 9 VFHPKQDLQTLYKKHTSIRRITK 31
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,434
Number of Sequences: 59808
Number of extensions: 390432
Number of successful extensions: 2052
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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