Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0188
(670 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.0
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 2.0
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 22 6.1
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 22 6.1
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 8.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 284 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 382
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 300 RPPSRPVHPSYNRCLCQPVPLCILSFSRPFK 208
R P R V PS+ + L C+L SRP K
Sbjct: 352 RTPDRYVMPSWIKMLFLQWLPCLLRMSRPGK 382
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.4 bits (48), Expect = 2.0
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -1
Query: 367 CCWCCSS 347
CCWCC +
Sbjct: 12 CCWCCDN 18
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 6 LFVIKGILVCFLNKVFCL 59
+ ++ G+LVC+LN L
Sbjct: 555 IILLAGVLVCYLNTFLLL 572
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 6 LFVIKGILVCFLNKVFCL 59
+ ++ G+LVC+LN L
Sbjct: 645 IILLAGVLVCYLNTFLLL 662
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 285 PVHPSYNRCLCQPVPLCILSFSRPFK 208
P P YN L P FSRPF+
Sbjct: 81 PTTPEYNNHLYGSTPDSRDYFSRPFE 106
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,215
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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