Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0188
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r... 32 0.30
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.40
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ... 31 0.52
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ... 31 0.52
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr... 31 0.92
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 1.6
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 4.9
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 4.9
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 4.9
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 28 4.9
At1g23230.1 68414.m02906 expressed protein 28 4.9
At3g47836.1 68416.m05214 expressed protein 28 6.5
At2g47060.2 68415.m05880 serine/threonine protein kinase, putati... 28 6.5
At2g47060.1 68415.m05879 serine/threonine protein kinase, putati... 28 6.5
At1g72110.1 68414.m08335 expressed protein 28 6.5
At1g20400.1 68414.m02544 myosin heavy chain-related 28 6.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 8.5
At2g11005.1 68415.m01177 glycine-rich protein 27 8.5
>At1g75520.1 68414.m08776 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 346
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 327 WWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKM--SGGFTSNGNNTTPSYEYRIMSNS 500
W P + +HQQQ ++ A+ YS+ M SG ++N NN + S + ++S+
Sbjct: 54 WPPQYFQQQEHQQQQQQQ---QHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDH 110
Query: 501 NTRKLHLSNNGG 536
++ GG
Sbjct: 111 EPGGFTVTRQGG 122
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 349 SPALLGHHEASSRAPQAPPVAPRSPILQPLPVS 251
SP G SS +P PPV P PI+ P P S
Sbjct: 583 SPPFTGPSPPSSPSPPLPPVIPSPPIVGPTPSS 615
>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 369 LNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 506
LN+ + T ++ + M ++N N T PS+ M NSNT
Sbjct: 154 LNQNVQLDATTLAKAQLLHTMIQVLSTNNNTTNPSFSSSTMQNSNT 199
>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 369 LNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 506
LN+ + T ++ + M ++N N T PS+ M NSNT
Sbjct: 154 LNQNVQLDATTLAKAQLLHTMIQVLSTNNNTTNPSFSSSTMQNSNT 199
>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 625
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 319 SSRAPQAPPVAPRSPILQPLPVSTSS 242
S P +PP +P P +QP PVST S
Sbjct: 207 SHPCPGSPPFSPPPPFIQPPPVSTPS 232
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 252 DTGSGCRMGERGATGGAWGARDDASWWPSSAGELQH-QQQLNEEIGTSTATTSQQMYSYK 428
+TG G A+GGA + AS +S+G ++ + G S T+ +
Sbjct: 359 ETGGSAETGGESASGGAASGGESASGGAASSGSVESGGESTGATSGGSAETSDESASGGA 418
Query: 429 MSGGFTSNG 455
SGG +++G
Sbjct: 419 ASGGESASG 427
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 294 GGAWGARDDASW--WPSSAGELQHQQQLNE 377
GG W AR+D SW P G + QQ+ E
Sbjct: 784 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 813
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 294 GGAWGARDDASW--WPSSAGELQHQQQLNE 377
GG W AR+D SW P G + QQ+ E
Sbjct: 784 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 813
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 294 GGAWGARDDASW--WPSSAGELQHQQQLNE 377
GG W AR+D SW P G + QQ+ E
Sbjct: 785 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 814
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 SGCRMGERGA-TGGAWGARDDASWW-PSSAGELQHQQQLNEEI 383
SG R G G GG G R + WW P E QQQ E+
Sbjct: 19 SGRRGGRGGGGRGGGGGGRGEQRWWDPVWRAERLRQQQAEMEV 61
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 316 TMPRGGQVAQVNCSTNNN*MKK*ALVQPLQVNKCTHIKCRVALHLMETILLPVMNIEL 489
++ G Q+A+ N M+ ++ VN + C++ L +E+ L PV + E+
Sbjct: 195 SVENGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEI 252
>At3g47836.1 68416.m05214 expressed protein
Length = 64
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 369 IVVGAAVHLRYLATTRHRRAHPKRPPSRPVHPSYNRCLCQPVPLCILSFS 220
IVV L R+ + +P P S ++PS +RC + + + LS++
Sbjct: 3 IVVSLGTTLNLSWRLRNLKNNPNDPNSVAIYPSSSRCFLESLCVLFLSYN 52
>At2g47060.2 68415.m05880 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 397
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 331 HHEASSRAPQAPPVAPRSPILQPL 260
HH+AS A + PPV PI P+
Sbjct: 37 HHQASETAQKGPPVVKLQPIEVPI 60
>At2g47060.1 68415.m05879 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 365
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 331 HHEASSRAPQAPPVAPRSPILQPL 260
HH+AS A + PPV PI P+
Sbjct: 37 HHQASETAQKGPPVVKLQPIEVPI 60
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 472 LGVVLFPLDVKPPDILYEYI 413
+G VL PL +KP D ++EY+
Sbjct: 326 IGYVLIPLGMKPQDDVFEYV 345
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 329 PRGIVARTPSAPRRAPFTHPTTAACVNQFLYVFC 228
PRG+VAR P R P+T P CV + C
Sbjct: 309 PRGLVARVPETHER-PWTTPEGYMCVYEKFLTEC 341
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 334 GHHEASSRAPQAPPVAPRSPILQPLPVSTSS 242
GHH P PP P P + P PV+T++
Sbjct: 112 GHHHHRRSPPPPPPPPPPPPTITP-PVTTTT 141
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 334 GHHEASSRAPQAPPVAPRSPILQPLPVSTSS 242
GHH P PP P P + P PV+T++
Sbjct: 143 GHHHHRRSPPPPPPPPPPPPTITP-PVTTTT 172
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +3
Query: 255 TGSGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMS 434
+G G G+ G +G G+RD SS G + ++ ++ +
Sbjct: 24 SGDGSGSGDGGGSGDGGGSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSRDG 83
Query: 435 GGFTSNGN 458
GG NGN
Sbjct: 84 GGSGDNGN 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,706
Number of Sequences: 28952
Number of extensions: 267179
Number of successful extensions: 978
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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