Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0186
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   9.3  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   9.3  

>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 556 YERARLQMEKKNRK*SKLVIEKSNIRLLRIEYLQKIINYRQKRRSNRPSRKL 401
           + R+      KN+  S  + +K     + ++ ++ IIN R KR+ NR   +L
Sbjct: 70  FSRSHQMCSDKNK--SPFLFDKIRDEPVSVDPVKLIINNRNKRKINRQKSRL 119


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 588 FNGSE*SLRRIMKELGFRWKKKTEN 514
           F+G    L  +++E+G+ W  +T N
Sbjct: 567 FDGQVEKLHSVLEEIGYNWVDETNN 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,290
Number of Sequences: 5004
Number of extensions: 41855
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)