Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0186
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   9.9  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 472 RIEYLQKIINYRQKRRSNRPSRKLHR*A-LCRLI 374
           RIEY  KIIN R  + S+R  +KL R A +CRL+
Sbjct: 36  RIEYAAKIINTR--KLSSRDLQKLDREARICRLL 67


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = -3

Query: 622  ERLRKF*RRYT---F*WLGMKFTTNYERARLQMEKKNRK*SKLVIEKSNI--RLLRIEYL 458
            +RLR+F RR        +G +F     R RL   K  R   ++   K N+  RL R    
Sbjct: 1161 KRLRQFVRRAVRRRVRRVGRRFRRK-RRRRLIRRKTRRFARRVQRHKRNLQKRLRRARRR 1219

Query: 457  QKIINYRQKRRSNRPSRKLHR*ALCRL 377
            +++    ++RR  R SR+ HR  L RL
Sbjct: 1220 RRLRKRIRRRRRQRRSRRYHRRQLRRL 1246


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 495 KKVTFDYYESNIFKK*LIIDKKE 427
           + +T DY+E N F+K L+IDK +
Sbjct: 222 RDLTVDYFERNGFQKPLLIDKTD 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,718
Number of Sequences: 59808
Number of extensions: 261146
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)