Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0186
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40316.1 68415.m04968 expressed protein                             31   0.65 
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ...    29   3.5  
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    28   4.6  
At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CS...    28   6.1  
At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative / cel...    27   8.1  
At4g19140.1 68417.m02824 expressed protein                             27   8.1  

>At2g40316.1 68415.m04968 expressed protein
          Length = 214

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 170 NINKKCRLIIVII*SWGKIDIPSIKSKLGCCQVLVQLKRSCIC 298
           N N+ C L + +I    K+D P   +K G CQ   QL+    C
Sbjct: 84  NRNQNCSLSVSVICQKTKVDGPLTLAKSGTCQYATQLRHPAGC 126


>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 373

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 487 YFFQLPALIIFCFFFPSEA 543
           YFF L  L + CFFFP +A
Sbjct: 13  YFFSLCFLFLGCFFFPKDA 31


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -3

Query: 574 MKFTTNYERARLQMEKK---NRK*SKLVIEKSNIRLLRIEYLQKIINYRQKRRSNRPSRK 404
           +K   N++ A+ Q +KK   NR+ S   +   +   +RI     +I+ +QK+R    S +
Sbjct: 153 IKIVPNFDVAKQQQQKKIIMNREGSDTAVFNGDQEKIRIGLNVDVIHEQQKKRRKMASEE 212

Query: 403 LHR 395
           + R
Sbjct: 213 IRR 215


>At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CSN
           complex subunit 2 (CSN2) proteasome, COP9-complex and
           eIF3-domain protein; identical to CSN complex subunit 2
           [Arabidopsis thaliana] GI:18056655; identical to cDNA
           CSN complex subunit 2 (CSN2) GI:18056654
          Length = 439

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 154 KNTYVDFNNLIAL*RR--VNNVFAREYTMRKLTPIRQQMLKKFAGYYTKI 11
           +N  ++F  ++   RR  +++ F R Y    L  +R Q+L K    YTKI
Sbjct: 316 RNEIIEFERILKSNRRTIMDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKI 365


>At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to
           endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
           [Brassica napus]
          Length = 620

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 612 ENFKEDIHFNGSE*SLRRIMKEL---GFRWKKKTENN 511
           + + + +H  G+  S+ + MKE    GF+WKK  +NN
Sbjct: 507 QRYPKQVHHRGA--SIPKNMKETCTGGFKWKKSKKNN 541


>At4g19140.1 68417.m02824 expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 212 SWGKIDIPSIKSKLGCCQVLVQLKRSCICIFFF 310
           SW      S+K +     +LVQ+KR+C+ + +F
Sbjct: 253 SWFPQACCSVKRQFSKVNILVQVKRACLLLVYF 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,824
Number of Sequences: 28952
Number of extensions: 189329
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)