Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0185
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   7.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   7.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   10.0 

>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 261 DYIVKWQNLIFCKCGCYFHGC 323
           D I K + LIF  CG  +H C
Sbjct: 377 DIIRKSRRLIFVACGTSYHSC 397


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 610 FLTTCASGLAHGAPLQTSSRIRAAGKYAGYFYIN 509
           F+  CA G A GAP+ T   I A   +   +YIN
Sbjct: 211 FVWACAGG-AIGAPMATGVDINAKYGWRWLYYIN 243


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 31  NYNCHRYDFIIWSMPSYCRSDRKCSNNLKPKVKLISK 141
           N +CH Y+ + W  P Y +   K  +++ P ++   K
Sbjct: 586 NPDCHEYEDVKWEGPQYEKWALKVIDSILPYLEAKDK 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,044
Number of Sequences: 5004
Number of extensions: 44594
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)