Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0185
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    29   4.5  
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773...    28   5.9  

>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 261 DYIVKWQNLIFCKCGCYFHGCCKDGVSVA 347
           +++VKW+ L +C+    +  CC DGV  A
Sbjct: 473 EFLVKWKGLDYCE--ATWEPCCTDGVQQA 499


>02_03_0407 -
           18675368-18675378,18676047-18676977,18677323-18677376,
           18677809-18678039,18678112-18678319,18678405-18678433,
           18678638-18678706,18678832-18678893,18679056-18679133,
           18679243-18679315,18681135-18681260
          Length = 623

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +1

Query: 76  SYCRSDRKCSNNLKPKVKLISKKN--KFWFI*L---FQNNLGLSTYLNIIPASEASIK** 240
           S+ R   KC   L+P+VK IS+K+   + F  L     +N G STY +     E S    
Sbjct: 217 SFFRKGLKCLEALEPRVKAISEKHHIDYNFSGLEDDGSDNDGYSTYDSCSDDGELSFDYE 276

Query: 241 CNERDRLIIL*NGRILYFVNVAATSMVAVK 330
            N+RD+  +   G + +  +   TS   +K
Sbjct: 277 INDRDQDFLTSRGSMDFDKSDQTTSPKPIK 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,016
Number of Sequences: 37544
Number of extensions: 251856
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)