Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0183
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.50 
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    28   1.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.0  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   6.2  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   8.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   8.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   8.2  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 309 AIRNPLVKASYVIVFKKDSSYQYVTSSIPRPP 214
           +I+NPL  +  ++   +D   QY+T+SI +PP
Sbjct: 762 SIQNPLTLSKKLLSSWRDDFAQYITNSIKQPP 793


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 41  SKCYLNFLLYFMKNADYSGGSNFL*YFCNFRKSYRIS*KKSEYFE 175
           +KC +N   +  +  +Y   SNF  Y  NF+K+Y    K SE  E
Sbjct: 333 TKCIINPYEFGFETGNYYTLSNFEKYCDNFKKNYFSKFKDSEITE 377


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 540 ICKVVYGRQSYVITSVAELLELLNLTSREDRDKCVTI 650
           +C  ++G QSY+    A L E+LN+++ + + K   +
Sbjct: 245 VCIRLWGSQSYLQEKKAGLAEVLNISTSQQKPKTTAL 281


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 558 GRQSYVITSVAELLELLNLTSREDRDKCVTIQRLGVS-CVSIACSALSLARSDS 716
           G  S V  +  ELL+  N +S   +D C ++Q  G +  V I   A++  R+DS
Sbjct: 214 GLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAMLVEITERAMAHIRADS 267


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 315 LRAIRNPLVKASYVIVFKKDSSYQYVTSSIPRPPLIR 205
           LR    PL+  S   V   +       S +P+PP+ R
Sbjct: 98  LRGTERPLITTSVTAVLSSNGKLGTEISEVPQPPIPR 134


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 278 MSSFSRKIRVISMLPQVYLDLHSFEVTLINT--WRWPRNIRFSFTIYDTIF*NYKNITKN 105
           ++ F + +  +   P ++ +L+SF      +  +  P  + F+    D ++       K 
Sbjct: 352 LNGFKKPVIAVRFSP-IHYELNSFSNFSFTSVSFNLPYRMVFAVACQDAVYIYDTQTCKP 410

Query: 104 YYRQNNLHFS 75
           +YR  NLH+S
Sbjct: 411 FYRAVNLHYS 420


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -3

Query: 264 KKDSSYQYVTSSIPRPPLIRGYINQHLEVASK 169
           + +S+Y+Y    +P+PP ++ + N++L   +K
Sbjct: 439 QSESTYEYSARQLPKPP-VQAWQNENLSSNNK 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,851
Number of Sequences: 5004
Number of extensions: 46706
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)