Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0183
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  32   0.53 
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   5.0  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   8.7  

>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 87   IILAVVIFCNIFVILENRIVYRKRKANISRPPPS 188
            I++ VV+ C I + +   I YRKRK+     PPS
Sbjct: 1329 IVIVVVVVCLIILAIVATIFYRKRKSKTKVNPPS 1362


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 309 AIRNPLVKASYVIVFKKDSSYQYVTSSIPRPPLIRGYINQHLEVASKYSLFFYDIRYD 136
           ++ NP+ K S    F KDS Y  V  +    P  +G +     + S Y+    DI Y+
Sbjct: 758 SVYNPVNKGSVYNPFNKDSVYNPVNKNSVYNPFNKGSVYNPFNINSVYNPVNKDIVYN 815


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 454 YDKFALSHFTLSSPHTQLRFYYAHANAQC 368
           YD FA S   +   H   RFY+ ++ + C
Sbjct: 564 YDSFARSRVVIRKGHVAQRFYFIYSGSVC 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,169
Number of Sequences: 59808
Number of extensions: 343254
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)