Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0183
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    30   1.4  
Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 3   CLFSWKNRTIM--YSVNAI*I---FYFIL*KMQIILAVVIFCNIFVILENRIVYRKRK 161
           C +SW     M  Y V+   +   FY I  K   I+ +++  ++FVI + R +Y+K K
Sbjct: 143 CKYSWSTEMWMFLYHVSNQCVSFSFYAIFCKYISIIFIIVLIDVFVICKARFMYKKSK 200


>Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical
           protein T05E11.4 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 546 KVVYGRQSYVITSVAELLELLN 611
           K VYG Q Y+ +S+  + ELLN
Sbjct: 122 KAVYGNQKYLDSSIKSICELLN 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,137
Number of Sequences: 27780
Number of extensions: 257061
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)