Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0183
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    27   9.4  

>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 636 KCVTIQRLGVSCVSIACSA 692
           KC+ IQ +G SC +I+CS+
Sbjct: 5   KCMIIQPVGASCSNISCSS 23


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 81  MQIILAVVIFCNIFVILENRIVYRKRKANISRPPPSVD*CNL 206
           M++IL V+  C+    L +   +R   + ISRPPP +  C L
Sbjct: 1   MRLILTVM--CSFIPYLYSSSPHRPCSSPISRPPPRIRPCRL 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,644
Number of Sequences: 28952
Number of extensions: 227320
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)