Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0182
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    40   3e-04
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    30   0.37 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    29   0.85 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.9  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 193 CPPRSQRICPRTHPRFLCSQ*TMGADYIEPDLVMTKD-GVLVARHDNELSLTTDVASRIE 369
           CP +     P  HP  L SQ  +G  Y++P LV++K  G L+ ++ N+LSL     S ++
Sbjct: 430 CPKKFVARPPVPHPTSLYSQIRIGCPYLKPKLVISKSFGTLIVKNHNQLSLLKCTFSNLD 489


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 259 MGADYIEPDLVMTKDGVLVARHD 327
           +GA Y+E D+ MTKD V V  HD
Sbjct: 781 LGASYVELDVQMTKDMVPVVYHD 803


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 262 GADYIEPDLVMTKDGVLVARHDNELS 339
           GAD +E D+ +TKD V+   HD  L+
Sbjct: 67  GADCVETDVRLTKDEVVCILHDRNLN 92


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 30/107 (28%), Positives = 45/107 (42%)
 Frame = -3

Query: 596  NSNSSFLTFLQTFRQTNDFLKRRNREGAILRALPALISGMRSLARNVFISASVKSSVNQP 417
            +S SS      T   T+        + +      A I+G  SL+ ++  +ASV  S    
Sbjct: 1038 SSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITG--SLSSSI-ATASVTGSPTSS 1094

Query: 416  VIADPSTV*VRLRVANSIRLATSVVKLSSLSCRATSTPSFVITRSGS 276
            V A  ST  V    +++I  A S   LSS +   +ST +   T S S
Sbjct: 1095 VTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSS 1141


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 29  FVCSLTDIWVSNMKIFGLLVLSFSTVGITFGIPVNENLDFNSEFLNSDFCSPLIIA 196
           F CSLTD+W   +    L+       GIT+    N+     S F N+D+  P+I+A
Sbjct: 239 FDCSLTDLWGRALS-RKLVDAERGGPGITYSSMRNQ-----SWFQNADYPYPIIVA 288


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 29  FVCSLTDIWVSNMKIFGLLVLSFSTVGITFGIPVNENLDFNSEFLNSDFCSPLIIA 196
           F CSLTD+W   +    L+       GIT+    N+     S F N+D+  P+I+A
Sbjct: 239 FDCSLTDLWGRALS-RKLVDAERGGPGITYSSMRNQ-----SWFQNADYPYPIIVA 288


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 71  IFGLLVLSFSTVGITFGIPVNENLDF 148
           I  LL + FS V + F +PV+ ++DF
Sbjct: 711 IHTLLKVIFSVVPLPFDVPVDNSVDF 736


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 366 NTTCDVGCQTQFVVMSGHKYPVFR 295
           +T CDV   + FVV    +YP  R
Sbjct: 53  DTVCDVSSNSTFVVKCNRQYPCTR 76


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 677  FYGVCSQQLLHCQT*FL---KMCAMFYFWINSNSSFLTFLQTFRQTNDFLKRRNREGAI 510
            F  +C Q+L + +   L   ++CA      +S+SSF T ++   Q ND L  +   G +
Sbjct: 1299 FSYICLQKLFYPRDIDLLRRRLCAKSDDETSSSSSFATDIEMCEQCNDPLSSKKNSGIV 1357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,575
Number of Sequences: 5004
Number of extensions: 64681
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)