Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0182
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       31   1.2  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_45509| Best HMM Match : PX (HMM E-Value=0.063)                      28   6.4  
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  28   8.4  

>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 151  IEIKVLIYWNSKSDPHGAKGKHQQPEDFHIANPNIRERTHKKILSLN 11
            ++  V   W S   PH AK  HQQ  ++   +P  + + H  I  L+
Sbjct: 986  VDTAVRTLWRSVVVPHSAKDTHQQIPEYRRGSPRRQRKNHDFISILS 1032


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 513 GTFTIPTFQEIISLAKGLQKSQ--KRTIGIYPEIKHSTHFKKL 635
           G + +P  ++++ + KG+ KSQ  K   G+ PE+  +    KL
Sbjct: 665 GVWIVPAIRQLLKITKGMSKSQYNKHDKGVLPELNKTYDIIKL 707


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 419  VGSRKILHWPK*KRYE--LENAYQISELATHVGWHLHDSYVSRN 544
            V S    +WP  + Y   + N++Q+S++ TH+G+  + +  S N
Sbjct: 3827 VDSSNSANWPLMQGYSRYIVNSFQVSQIGTHIGYITYSNDASIN 3870


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -3

Query: 497 PALISGMRSLARNVFISASVKSSVNQPVIAD---PSTV*VRLRVANSIRLATSVVKLSSL 327
           P+ ++ M +L  +V ++ S+ S+   P I+    P    V +   N+ R+ATSV+ LSSL
Sbjct: 731 PSYVANMTTLDSSVSLTRSLLSTTLIPSISTSILPYNTTV-IATPNTTRIATSVILLSSL 789

Query: 326 S 324
           +
Sbjct: 790 N 790


>SB_45509| Best HMM Match : PX (HMM E-Value=0.063)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 189 ISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTKKYCH*T 10
           I  ++K       L+SR SFT     I    +E T+SP +   +  +S    T+ YC  T
Sbjct: 477 IGAKRKLRVSIEMLRSRASFTSEGLAIIDTTQEYTSSPYLPPTVLSLSSGSFTQGYCSDT 536

Query: 9   KQI 1
           + I
Sbjct: 537 ELI 539


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 256 TMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASR 363
           + G  ++E D+ +TKD V V  HD+ + L+ + +++
Sbjct: 258 SQGVHFVEFDVHVTKDHVPVVFHDDTVKLSVETSNQ 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,808,487
Number of Sequences: 59808
Number of extensions: 477666
Number of successful extensions: 1278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)