Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0181
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.6  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   6.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 237 FVRCSSYLPIFVSNSFTPILRTVQPVVNSHDCISLCGL 350
           F   S +   FV+ S  PILR    V  SH+ +++C +
Sbjct: 450 FTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVCNI 487


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 410 LQCCIFFVLFCFSEQHILRIFDQNPLKISSS*QFVESIFQMIIKSFLSSFPP 565
           L C +   + C  EQH+ R +     K +S+  F  S  Q ++K   S F P
Sbjct: 160 LSCRMNACVLCRMEQHVARAYPNKGTKRASA--FKPSGIQSMLKVISSHFRP 209


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 104 DINFNEYINIQILFIFCF 51
           ++N+N Y+N  ILF  CF
Sbjct: 450 NLNWNVYLNFIILFSMCF 467


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 467 FSGYAVQKNKTRQKRYNIEVSITLGTLSGTF*AVASWL-I*AT**NAVMGV 318
           FS +A + N   +K   + + +T GTL G   AVA  L I  T  NA++G+
Sbjct: 2   FSRFATRYNALFEKAPIMTMCLTAGTLGGISDAVAQGLTIYQTNKNAMIGL 52


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 178  SYFNKNISSVLCCTNTFS-FYVITFK 104
            +Y N+N+SS+  C   FS FY + F+
Sbjct: 1713 TYLNQNVSSLEKCNQIFSIFYEVFFQ 1738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,652
Number of Sequences: 5004
Number of extensions: 49497
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)