Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0181
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    29   4.3  
U40409-7|AAA81386.3|  304|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    28   5.6  
AL117202-27|CAB57897.1|  579|Caenorhabditis elegans Hypothetical...    28   7.4  
AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.       28   7.4  

>AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical
           protein C55C2.4 protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 380 YQRECLK*LRLQCCIFFVLFCFSEQHILRIFDQN 481
           Y+ + LK  RL  CI  +    S Q++LRIF +N
Sbjct: 133 YKSDLLKFYRLSACIVLLSLALSLQNVLRIFYEN 166


>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 FVRCSSYLPIFVSNSFTPILRTVQPVVNSHDCISLCG 347
           F RCSS+L IF++N    I+R V    NS    S  G
Sbjct: 111 FRRCSSWLDIFIANVRYIIMRKVSGARNSKTAQSKLG 147


>U40409-7|AAA81386.3|  304|Caenorhabditis elegans Hypothetical
           protein F32A6.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 587 ESYLFNNQVEK--KKENSLLSFERYFQQIVMKKIF*VGFDQRFSGYAVQKNKTRQKRYNI 414
           E  +   ++EK  KK  ++  F++  Q  +  +    G   R++ +A++K + RQK  NI
Sbjct: 181 EKQILLRKIEKTEKKVQNIPYFDKQMQLALQLR----GEKTRYADFAIEKQQERQKVLNI 236

Query: 413 EVSI 402
           E  I
Sbjct: 237 EARI 240


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 125 ILCYYF*DINFNEY-INIQILFIFCFEILKRMTCHFLTL 12
           +LC YF  + FN Y +++++   F F   +   C F TL
Sbjct: 158 LLCVYFFSLAFNSYSLSLRLSDHFIFTFYRYWCCFFCTL 196


>AL117202-27|CAB57897.1|  579|Caenorhabditis elegans Hypothetical
           protein Y47D3A.23a protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 249 SSYLPIFVSNSFTPILRTVQPVVN 320
           +S + IF   ++TP+LRTV  V+N
Sbjct: 136 TSVIIIFTDEAWTPLLRTVHSVIN 159


>AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 249 SSYLPIFVSNSFTPILRTVQPVVN 320
           +S + IF   ++TP+LRTV  V+N
Sbjct: 136 TSVIIIFTDEAWTPLLRTVHSVIN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,904,462
Number of Sequences: 27780
Number of extensions: 266656
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)