Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0180
(592 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF125546-1|ABL73930.1| 237|Tribolium castaneum obstractor C2 pr... 22 3.4
EF125545-1|ABL73929.1| 274|Tribolium castaneum obstractor C1 pr... 22 3.4
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 22 4.5
EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggeri... 22 4.5
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 5.9
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 21 5.9
EU008544-1|ABS31131.1| 493|Tribolium castaneum cytochrome P450 ... 21 7.8
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 21 7.8
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 138 SLQDMLDIDIKNEIAT 185
+LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 138 SLQDMLDIDIKNEIAT 185
+LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 138 SLQDMLDIDIKNEIAT 185
+LQ ++D+D KN+I T
Sbjct: 36 TLQQIIDVDEKNQILT 51
>EF125546-1|ABL73930.1| 237|Tribolium castaneum obstractor C2
protein.
Length = 237
Score = 22.2 bits (45), Expect = 3.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 299 WNCYLAT*SNYQC 261
WNC+ S YQC
Sbjct: 112 WNCWNGEASRYQC 124
>EF125545-1|ABL73929.1| 274|Tribolium castaneum obstractor C1
protein.
Length = 274
Score = 22.2 bits (45), Expect = 3.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 299 WNCYLAT*SNYQC 261
WNC+ S YQC
Sbjct: 112 WNCWNGEASRYQC 124
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 21.8 bits (44), Expect = 4.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 290 NSSSFVHNLDLYGSEANAVMVNPN 361
N + V N+DLY N NPN
Sbjct: 192 NGAVNVDNIDLYEEIFNGNRANPN 215
>EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggering
hormone receptorisoform B protein.
Length = 451
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 367 DAFKLCRNTSKKCS*RRSVK 426
D+F RN+ KKC R +K
Sbjct: 401 DSFLSKRNSEKKCGSLREIK 420
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 21.4 bits (43), Expect = 5.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 290 NSSSFVHNLDLYGSEANAVMVNPN 361
N + + N+DLY N NPN
Sbjct: 199 NGAVNIDNIDLYEEIFNGNRANPN 222
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 21.4 bits (43), Expect = 5.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 392 PVKSVVKEEASNVLLSSVANRDSESK 469
PV++V + N+LL ++ N + SK
Sbjct: 664 PVRNVSVDVRDNILLKNLQNPSTGSK 689
>EU008544-1|ABS31131.1| 493|Tribolium castaneum cytochrome P450
protein.
Length = 493
Score = 21.0 bits (42), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 534 NCVWRKC*VLFSSFGLASVELCFDSESLLATDERRTFDASSL 409
NC+ ++ +L S LASV F + T FD SL
Sbjct: 436 NCIGQRFALLVSKVALASVVKDFVFDPTERTPVPLRFDPGSL 477
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 40 RKCAKFRIFLLSKRIFTLINIRGAQTWICISPT 138
R A ++ +L +F N+R + C+S T
Sbjct: 33 RSGASLQVGILDSLVFKCYNLRRIYYFYCVSIT 65
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,518
Number of Sequences: 336
Number of extensions: 3029
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -