Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0180
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.054
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.22
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.38
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 28 0.89
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 2.0
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 27 2.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.7
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 26 4.7
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 25 6.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 6.2
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 8.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 8.3
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 8.3
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 32.3 bits (70), Expect = 0.054
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 314 LDLYGSEANAVMVNPNSVMPSNFAETP---VKSVVKEE-ASNVLLSSVANRDSESKHNST 481
L LYG++A NP+SV+PSN + TP K+V KE N S D+ S S
Sbjct: 173 LSLYGNQA----FNPSSVLPSNSSSTPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSN 228
Query: 482 LASPKEEKS 508
L P S
Sbjct: 229 LYMPSPPSS 237
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 329 SEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNST 481
SE ++ +++ +S +PS + TP S++ ++VL SS + S S S+
Sbjct: 505 SEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.5 bits (63), Expect = 0.38
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 383 AETPVKSVVKEEASNVLLSSVANRDSESKHNS 478
AE+ V+S K + S LSS N+DSE N+
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEKNDNN 507
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 260 DTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSN 379
D ++C WLN+ SFV Y S N ++ + +P N
Sbjct: 113 DNNSC-VWLNSVKSFVEKQFSYSSGTNGILATFLTAIPPN 151
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 347 MVNPNSVMPSNF-AETPVKSVVKEEASNVLLSSVANRDSESKH 472
++ P P+ F A TP V S+V LSS++N +S H
Sbjct: 453 LIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPH 495
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 335 ANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTL 484
A ++N N+ P F VK + +EE VLL+S+ N + N L
Sbjct: 71 AEGTLLNANT--PQEFTNADVKKI-REEIGEVLLNSIKNGVVSERPNELL 117
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 423 DASSLTTLFTGVSAKFEGITEFGFTITALAS 331
DAS T+FT +S +G T G+TI++ +S
Sbjct: 739 DASGFNTIFTSISQSSDGETS-GYTISSNSS 768
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 281 WLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDS 460
WL+ + +H DLY + A++ PNS++ ++ AE + K EAS L+S +S
Sbjct: 213 WLSERN--IHT-DLYETHASS----PNSLLVTSLAE-----IWKSEASRRNLTSSDETNS 260
Query: 461 ESKHNSTLASPKEEKS 508
SK + + KEE S
Sbjct: 261 FSKLHQSQFGLKEESS 276
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = +2
Query: 233 FRHATVTHMDTDNCSTWLNNSSSFVHNLDLYGSEANAV 346
++ + H D +W+NN + ++ ++ LY E +++
Sbjct: 6 YKFSDELHDDFKVVDSWINNGAKWLEDIQLYYKERSSI 43
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 460 RIETQFNASQSKRRKKYLTFSPNTIKVSKVHETEEI 567
R ET+ N S R YL +P T+ S + T ++
Sbjct: 79 RAETEANESPKAPRNDYLQVTPKTVDKSLLGPTPQL 114
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 305 VHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS----SVANRDSE-SK 469
+ N + ++N + N NS ++ +PV + + SNVL S SV + D+E S+
Sbjct: 136 ISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTGRTSVLHIDAEQSQ 195
Query: 470 HNSTLASPKEE 502
N+T+ K++
Sbjct: 196 TNNTVTPLKDD 206
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 288 FSHVEQLSVSM*VTVACRKNLYQTNLENLI 199
+ H+E+ +S+ ++V KNL N EN++
Sbjct: 657 YCHMEETQLSLYLSVLELKNLVNANRENIL 686
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 8.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 326 HINLNYEQNWNCY 288
H+N Y +W+CY
Sbjct: 264 HVNTRYSMSWDCY 276
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 362 SVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKST 511
SV AE P ++ + L++S+A R++E NST S EE T
Sbjct: 221 SVRKRLMAEVPYGVLLSGGLDSSLIASIAARETEKLANST--SQSEEART 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,558
Number of Sequences: 5004
Number of extensions: 49994
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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