Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0180
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    30   1.2  
02_02_0572 + 11667455-11670783,11672026-11672419                       30   1.2  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    29   2.1  
05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559     28   4.8  
01_04_0054 - 15456668-15459691                                         27   8.5  

>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +2

Query: 260 DTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS 439
           DT+N  T  N+    +   D     +N     PN+ + S   +  +  VV++  SN +L 
Sbjct: 268 DTNNTDTERNSGQLQLQMQDQLNMVSNDHQTIPNNAVSSELMQCEMSEVVRDGCSNNILE 327

Query: 440 SVANRDSESKHNS---TLASPKEEKST*HFLQTQLKS 541
                  + ++++    L  P E   + HFL  +L++
Sbjct: 328 DEIQMLMDCQNSNCQLNLQGPDEPCHSWHFLCEELQN 364


>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 108 CSDMDLYITDSLQDMLDIDIKNEIATDLSSISDFQDSFGTNFSDMPPLLTWTLIIALRG* 287
           CS+++ +I   + D +  +   E+  D +S++DF      N +D+P     TL+  +   
Sbjct: 28  CSELETHI--GVGDKVLAEFITELGRDSASVADFDTKLKANGADLPDYFVRTLLTIIHAI 85

Query: 288 ITVP 299
           +  P
Sbjct: 86  LPPP 89


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 311 NLDLYGSEANAVMV-NPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLA 487
           ++D+  +E   V   N   V+P +F+ TP K  +K+  S   LS     + E   N +  
Sbjct: 590 DIDILNNEVTPVFNHNEKYVVPDSFSPTPAKQAIKKLISTKNLSQTLEDNIEDCVNCSDN 649

Query: 488 SPKEEKST 511
             KE   T
Sbjct: 650 EDKENVDT 657


>05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559
          Length = 387

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +2

Query: 377 NFAETPVKSVVKEEASNVL-----LSSVANRDSESKHNSTLA 487
           +F   P K +++++AS+ +     LS   +RDSES HN   A
Sbjct: 133 DFVMVPPKGLLRDKASDAMVHRGWLSMYTSRDSESSHNKDSA 174


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +2

Query: 269 NCSTWLNNSSSFV-HNLDLYGSEAN--AVMVNPNSVMPSNFAETPVKS------VVKEEA 421
           NC T     S+ + H L     + +  AVM+N   V PS F+ +  KS      V K+E 
Sbjct: 233 NCKTKYQYYSNVLNHKLRCQNCKKDFRAVMLNEQDV-PSVFSSSAAKSAGQHCDVPKQED 291

Query: 422 SNVLLSSVANRDSESKHN 475
            +   SS ANRD++   N
Sbjct: 292 CSTKFSSAANRDAKPMVN 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,107
Number of Sequences: 37544
Number of extensions: 272133
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)