Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0180
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 32 0.40
SB_28071| Best HMM Match : GETHR (HMM E-Value=2.3e-22) 31 0.70
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 28 5.0
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 28 5.0
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 5.0
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_3098| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_46090| Best HMM Match : DUF1664 (HMM E-Value=2.4) 27 8.7
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 326 GSEANAVMVNPNSVMPSNFAETPVKSVVK-EEASNVLLSSVANRDSESKHNSTLASPKEE 502
G +A V+P V + + TP KS+ EEAS L +VA+ + +H+ SP++
Sbjct: 1237 GINPDASSVSPRKVARQSESSTPKKSISPLEEAS---LKTVASPKKDIQHSEQSISPRKN 1293
Query: 503 KST*H 517
+ T H
Sbjct: 1294 RRTVH 1298
>SB_28071| Best HMM Match : GETHR (HMM E-Value=2.3e-22)
Length = 439
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = +2
Query: 104 VVLRHGFVYHRLTPRHARHRHQE*NSHRS**YIRFSRFVWYKFFRHATVTHMDTDNCSTW 283
V RHG VY LT R+ HRH + + + Y H TVTH D
Sbjct: 218 VTHRHGDVYGCLTHRNVTHRHGDVYGCLTHRNVTHRHGDMYGCLTHRTVTHRHGDVYGCL 277
Query: 284 LNNSSSFVHNLDLYG 328
+ + + H D+YG
Sbjct: 278 THRNVTHRHG-DVYG 291
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 104 VVLRHGFVYHRLTPRHARHRHQE---*NSHRS**YIRFSRFVWYKFFRHATVTHMDTDNC 274
V RHG VY LT R+ HRH + ++HRS + Y H VTH D
Sbjct: 282 VTHRHGDVYGCLTHRNVTHRHGDVYGCSTHRS---VTHRHGDVYGCLTHRNVTHRHGDVY 338
Query: 275 STWLNNSSSFVHNLDLYG 328
+ + + H D+YG
Sbjct: 339 GCLTHRNVTHRHG-DVYG 355
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +2
Query: 104 VVLRHGFVYHRLTPRHARHRHQE*NSHRS**YIRFSRFVWYKFFRHATVTHMDTDNCSTW 283
V RHG VY LT R+ HRH + + + Y H VTH D
Sbjct: 26 VTHRHGDVYGCLTHRNVTHRHDDMYGCLTHRNVTHRHGDVYGCLTHRNVTHRHGDVYGCL 85
Query: 284 LNNSSSFVHNLDLYG 328
+ + + H D+YG
Sbjct: 86 THRNVTHRHG-DVYG 99
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +2
Query: 104 VVLRHGFVYHRLTPRHARHRHQE*NSHRS**YIRFSRFVWYKFFRHATVTHMDTDNCSTW 283
V RHG VY LT R+ HRH + + + Y H VTH D
Sbjct: 90 VTHRHGDVYGCLTHRNVAHRHGDVYGCLTHRNVTHRHGDVYGCLTHRNVTHRHGDVYGCL 149
Query: 284 LNNSSSFVHNLDLYG 328
+ + + H D+YG
Sbjct: 150 THRTVTHRHG-DVYG 163
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +2
Query: 104 VVLRHGFVYHRLTPRHARHRHQE*NSHRS**YIRFSRFVWYKFFRHATVTHMDTDNCSTW 283
V RHG VY LT R+ HRH + + + Y H VTH D
Sbjct: 154 VTHRHGDVYGCLTHRNVTHRHGDVYGCLTHRNVTHRHGDVYGCLTHRNVTHRHGDVYGCL 213
Query: 284 LNNSSSFVHNLDLYG 328
+ + + H D+YG
Sbjct: 214 THRNVTHRHG-DVYG 227
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 111 SDMDLYITDSLQDMLDIDIKNEIATDLSSISD 206
SD+ + + D LQ+M D+D NE S++ D
Sbjct: 432 SDISIAVIDLLQEMTDVDTLNESKEGASALID 463
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 498 SFGLASVELCFDSESLLATDERRTFDASSLTTL 400
S LAS+E F ++ A+DE R FD+ +T L
Sbjct: 552 SITLASIENLFKAKITQASDELRAFDSDLITRL 584
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 233 FRHATVTHMD--TDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVK 400
F AT D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P
Sbjct: 570 FTSATSVVFDSTTPNATTLVQSISASISPNVTINMTREANSTMIFPSTSVPYNTTLIPAP 629
Query: 401 SVVKEEASNVLLSSVAN 451
+ A+ + S VAN
Sbjct: 630 NATSTAATTMSPSYVAN 646
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 233 FRHATVTHMD--TDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVK 400
F AT D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P
Sbjct: 459 FTSATSVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLIPAP 518
Query: 401 SVVKEEASNVLLSSVAN 451
+ A+ + S VAN
Sbjct: 519 NATSTAATTMSPSYVAN 535
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 233 FRHATVTHMD--TDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVK 400
F AT D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P
Sbjct: 660 FTSATSVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLIPAP 719
Query: 401 SVVKEEASNVLLSSVAN 451
+ A+ + S VAN
Sbjct: 720 NATSTAATTMSPSYVAN 736
>SB_3098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 299 SFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESK 469
SF N DL+ +E + +PS+ E P+ S E SN + AN S+S+
Sbjct: 10 SFASNNDLFDAEIGEESNGAENGVPSDTEEKPLSS-TSEHDSNEENEAPANEGSDSE 65
>SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 248 VTHMDTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASN 427
V H T NC NN VH L+ A N ++ + A P KS + ++ SN
Sbjct: 29 VLHKQTCNCHKPQNNKPCVVHMTSLFDPMTTASHSNSPTLDMLDGALDPDKSSLHDQKSN 88
>SB_46090| Best HMM Match : DUF1664 (HMM E-Value=2.4)
Length = 140
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 DIKNEIATDLSSISDFQDSFGTNFSDMPPLLTW-TLIIALRG*ITVPVLFII 314
DI+ +I +ISDFQD F +P L +L +AL G I P+ I+
Sbjct: 52 DIQKDIKFLRETISDFQDRFSEVKIVIPVLKKLSSLRLALEGEIVFPIFKIV 103
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 410 KEEASNVLLSSVANRDSESKH-NSTLASPKEEKST*HFLQTQLKS 541
+EE VLLS + D + K TLA+ + H LQ QLK+
Sbjct: 848 REERVQVLLSRLQQADDDKKKLEETLATRHSTANKVHELQVQLKA 892
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 DIKNEIATDLSSISDFQDSFGTNFSDMPPLLTW-TLIIALRG*ITVPVLFII 314
DI+ +I +ISDFQD F +P L +L +AL G I P+ I+
Sbjct: 47 DIQKDIKFLRETISDFQDRFSEVKIVIPVLKKLSSLRLALEGEIVFPIFKIV 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,047
Number of Sequences: 59808
Number of extensions: 344486
Number of successful extensions: 876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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