Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0180
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter o... 30 1.1
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 4.3
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.7
AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical ... 28 5.7
U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF040651-2|AAB95015.1| 154|Caenorhabditis elegans Hypothetical ... 27 7.5
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 27 10.0
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 27 10.0
>AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter of
sr proteins protein1 protein.
Length = 949
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 177 IATDLSSISDFQDSFGTNFSDMPPLLTWTLIIA 275
IAT LS ISD D F + + + P++ WTL A
Sbjct: 461 IATSLSLISDLNDWFEQHSNLLEPVVRWTLQFA 493
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 212 RFVWYKFFRHATVTHMDTDNCSTWLNNSSSFVHNLDL 322
R + Y+ + + DT+ TW+N +F+ N DL
Sbjct: 476 RRILYEQCMDLQLFYRDTEQAETWMNKQEAFLANTDL 512
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
protein R09E10.7 protein.
Length = 1717
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 90 SNKYSWCSDMDLYITDSLQDMLDIDIKNEIATDLSSISDF 209
SN+ SWC + + + +I K IA ++S+SDF
Sbjct: 250 SNRSSWCKHVVALSIYRIYERSNIKFKETIADAINSMSDF 289
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 383 AETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKST 511
AET V + K +A S A +DS+SK + + EEKST
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKST 12647
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 383 AETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKST 511
AET V + K +A S A +DS+SK + + EEKST
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKST 12647
>AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical
protein ZK484.3 protein.
Length = 332
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 383 AETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEK 505
AE PVK VVK++A + + N S S ++ A+ K++K
Sbjct: 216 AEQPVKKVVKKKAISKKPPTTTNVTSTSDSSAAAAAAKKKK 256
>U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical
protein C50F7.6 protein.
Length = 418
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 236 RHATVTHMDTDNCSTWLNNSSSFVHNLDLYGSEANAVMVNPNSV 367
+H V H + +CS W N ++ + G +V V P+ V
Sbjct: 33 KHLIVEHTLSQSCSGWPNGAADTSSAYNTGGESCRSVSVTPDGV 76
>AF040651-2|AAB95015.1| 154|Caenorhabditis elegans Hypothetical
protein W04H10.2 protein.
Length = 154
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 203 RFSRF--VWYKFFRHATVTHMDTDNCSTWLNNSSSFVHN-LDLYGSEANAVMVNPNSVMP 373
R+S F +W+ FF ++ +NCS W + + N G E N + N +V+
Sbjct: 11 RYSTFNIIWFSFFIQKSLDQFFLENCSKWTYSICTIYGNSCTGDGLENNTCLKNYQNVI- 69
Query: 374 SNFAET-PVKSVVK 412
N+ T V SV K
Sbjct: 70 -NYKRTNDVLSVQK 82
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 89 VNILLLNRKILNFAHLR*KHYKIDRYNT 6
+NILLL + LNFA+ + Y D Y T
Sbjct: 105 LNILLLVNRTLNFANSKLSDYFFDGYRT 132
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 326 GSEANAVMVNPNSVMPSNFAE-TPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEE 502
G EAN V+V+ +SV + + + +SV A V+ S N + S N T E
Sbjct: 611 GREANPVLVSDSSVFGFSAPDLSACESVGSRSAREVVSSVAGNARNASGANITTIHVTES 670
Query: 503 KST 511
KS+
Sbjct: 671 KSS 673
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,928
Number of Sequences: 27780
Number of extensions: 273392
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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