Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0180
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   7.1  
At1g08800.1 68414.m00979 expressed protein weak similarity to SP...    27   7.1  
At3g17225.1 68416.m02200 invertase/pectin methylesterase inhibit...    27   9.4  
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam...    27   9.4  
At1g30860.1 68414.m03774 expressed protein                             27   9.4  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    27   9.4  

>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 341 AVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVA 448
           +V+ +P SV P++ A +PV + +  EAS  +L++ A
Sbjct: 173 SVVPSPVSVHPTSVAPSPVSACLTSEASKPVLANPA 208


>At1g08800.1 68414.m00979 expressed protein weak similarity to
           SP|Q02455 Myosin-like protein MLP1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF04576: Protein of
           unknown function, DUF593
          Length = 1113

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 359 NSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEE 502
           +S +  +F E P  + + EE   + L+ V +     +H++     KEE
Sbjct: 562 DSSLTPDFKENPASTFLVEETELICLNDVTSPSRAMEHSTVFIEEKEE 609


>At3g17225.1 68416.m02200 invertase/pectin methylesterase inhibitor
           family protein similar to SP|P83326 Pectinesterase
           inhibitor (Pectin methylesterase inhibitor) (PMEI)
           {Actinidia chinensis}; contains Pfam profile PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 185

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 RHATVTHMDTDNCSTWLNNSSSFVHNLDLYG 328
           R  T  H+DT+ C TWL  S    + LDL G
Sbjct: 42  RLCTEPHIDTNFCITWL-ISDPTTYTLDLQG 71


>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 2 AMPBP2 (AMPBP2) GI:20799712
          Length = 603

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 64  FLLSKRIFTLINIRGAQTWICISPTHS 144
           FLL+KR F + N R  + W+  SP  S
Sbjct: 3   FLLTKRAFRIFNPRFQRLWLTSSPFSS 29


>At1g30860.1 68414.m03774 expressed protein
          Length = 730

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 353 NPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKST*HFLQTQ 532
           N N+ +     ++PVK V+K   S+  L         +K+N  L SP E K   + + + 
Sbjct: 16  NQNAGVFQKNLKSPVKEVLKSHVSDENLVDSWIETHNNKNNRVLESPLESKRNDNLVASS 75

Query: 533 L 535
           L
Sbjct: 76  L 76


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 418 FFFNYTFYWCF 386
           FF +Y FYWCF
Sbjct: 736 FFVSYCFYWCF 746


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,509
Number of Sequences: 28952
Number of extensions: 244997
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)