Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0179
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    31   0.099
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    28   1.2  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    25   8.6  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 482 CIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLSNLCCRVRMCL*ISDK 324
           C+F +LHC V +M  F Y  +H +  +  I+ +      L   VR CL  ++K
Sbjct: 204 CVFFTLHCAVLIMKQFSY--SHHMGYISEIRILHNEYEKLLKFVRECLNSTEK 254


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 509 FLLYYVTQLCIFSSLH-CTVFLMLSFFYNLNHSVRPLDAIKHISFPLS--NLCCRVRMCL 339
           ++L  V   C F     C +  +LSF        R +DAI + S PL+   LC  +   +
Sbjct: 204 WVLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTII 263

Query: 338 *ISDKLNS 315
            + D L S
Sbjct: 264 GVDDLLMS 271


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 183 SVNDCMEGVCKIYEEHLKRRNP 248
           S+   ++ +CK+Y + LK +NP
Sbjct: 69  SIGKVLDYICKVYFDSLKLQNP 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,315
Number of Sequences: 5004
Number of extensions: 52911
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)