Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0179
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0584 - 24082867-24082960,24083071-24083191,24083693-240837...    61   6e-10
06_01_0210 - 1596578-1596868,1598550-1598828,1600503-1600511,160...    30   1.7  
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    29   3.8  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    28   6.7  
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640...    27   8.9  

>02_04_0584 -
           24082867-24082960,24083071-24083191,24083693-24083786,
           24084675-24084725
          Length = 119

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 25/55 (45%), Positives = 38/55 (69%)
 Frame = +2

Query: 245 P*YTTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 409
           P    ITYDI+ L++F+D LAD+S LVY  S   + PY++ WIK+K++  L++ A
Sbjct: 63  PMVPNITYDITDLYNFIDGLADISALVYDHSIQAFLPYDRQWIKQKLFQHLKKLA 117



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 19/46 (41%), Positives = 30/46 (65%)
 Frame = +3

Query: 120 HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTP 257
           HTI+L+QP     +RT+ DY S+N  ++G+C +YE  ++  NP  P
Sbjct: 21  HTIILMQPSQNRASRTFMDYNSINHALDGLCGLYERKIRDINPMVP 66


>06_01_0210 -
           1596578-1596868,1598550-1598828,1600503-1600511,
           1600713-1600781
          Length = 215

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 250 IHHYHVRYITTLRFCRPVGRSELFSLSE-IYKHIRTLQQRLDKGKDICF 393
           IHH H      +  CRP   S+ +SLSE + + I  ++ R   GKD+ F
Sbjct: 162 IHHCHCNSPGLVGVCRPKPHSDTYSLSEYLAQKIAAVELR---GKDMAF 207


>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 524 KHNNFFLLYYVTQLCIFSSLHCTVFL 447
           K N+F  ++ VTQL I + L  TVFL
Sbjct: 277 KRNSFLYIFKVTQLIILAFLSMTVFL 302


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 524 KHNNFFLLYYVTQLCIFSSLHCTVFL 447
           K N+F  ++ VTQL I + +  TVFL
Sbjct: 565 KRNSFIYIFKVTQLIILAFMSMTVFL 590


>11_04_0474 +
           18162538-18163731,18163800-18163855,18163951-18164011,
           18164107-18165495,18166024-18166635,18166706-18166852,
           18166941-18167209,18167322-18167412,18167500-18167757,
           18168376-18168450,18168937-18168945
          Length = 1386

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 150 RPETRTYSDYESVNDCMEGVCKIYEEHLKRRN 245
           R E    S Y+S ND ++ VC   ++H ++ N
Sbjct: 547 RVEPAKNSSYQSFNDALKAVCYYQQKHGQKSN 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,753
Number of Sequences: 37544
Number of extensions: 288137
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)