Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0179
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16765| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             29   3.9  
SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_35297| Best HMM Match : CO_deh_flav_C (HMM E-Value=4.8)             28   5.2  
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)                   27   9.1  
SB_12393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_16765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 156 ETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPLSRTIYHNSSIL 293
           E R Y +Y   N C  G   + E    R + N+P S + Y++ +++
Sbjct: 2   EEREYREYRGSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVV 47


>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 99  KDPLNMSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPLSR 266
           K P N+ H  L  +    P TR+Y   +      EG      EH K R P TP +R
Sbjct: 25  KAPFNVEH--LKARLPATPSTRSYDSLQ--RRAPEGTTVCNAEHPKARQPATPSTR 76


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 282 SCDISYVIVVY*GFAFSDVPHIFYTH 205
           S DI++ +  Y G   +D+PH  YT+
Sbjct: 215 SSDITHFVYTYHGVPSNDIPHFMYTY 240



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 282 SCDISYVIVVY*GFAFSDVPHIFYTH 205
           S DIS+ I  + G   +D+PH  YT+
Sbjct: 275 SNDISFCIYAHHGVPSNDIPHFMYTY 300


>SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 YTTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIK 376
           + +I + +  + DF DQ+A    L Y++  N Y  +N  + K
Sbjct: 270 FYSIRFPLMSMKDFTDQVARSGYLTYEEVANMYIGFNSGFQK 311


>SB_35297| Best HMM Match : CO_deh_flav_C (HMM E-Value=4.8)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 147 PRPETRTYSDY-ESVNDCMEGVCKIYEEHLKRRNPNTPLSRTIYHNSSIL 293
           P  E R Y+   ES N C  G   + E    R + N+P S + Y++ +++
Sbjct: 214 PAAEQRNYTQLLESSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVV 263


>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -2

Query: 376 LYPIFVVGCVCVCRFLIN*TAQICQLVYKIEEL*YIVRDSGVLGFRLFR 230
           L  IF++ C+CVC + I  TA+  +++    +L +++ DS  +G R F+
Sbjct: 5   LQNIFLL-CLCVCSWRIGHTAKRGRVLPDRIDLVFVLDDSHAIGQRNFQ 52


>SB_12393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 162 RTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPLSRTIYHNSSIL 293
           +T+   ES N C  G   + E    R + N+P S + Y++ +++
Sbjct: 4   KTHDSLESSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVV 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,593
Number of Sequences: 59808
Number of extensions: 379222
Number of successful extensions: 1562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)