Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0179
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...    66   1e-11
Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical p...    56   2e-08
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    29   2.6  
Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    28   6.0  
U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    27   8.0  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    27   8.0  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    27   8.0  

>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 25/45 (55%), Positives = 38/45 (84%)
 Frame = +3

Query: 114 MSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNP 248
           MSHTILL+QP    E+R++SDYE+  +C+EG+C++YEE+LK++ P
Sbjct: 1   MSHTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVP 45



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 29/55 (52%), Positives = 37/55 (67%)
 Frame = +2

Query: 233 EKAKP*YTTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLL 397
           +K  P    ITYDIS LF+F+D L DLS LV   +T TY P+NK ++KE IY L+
Sbjct: 41  KKKVPAQNEITYDISHLFEFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYKLM 95


>Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical
           protein F35G12.11 protein.
          Length = 113

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 34/43 (79%)
 Frame = +3

Query: 117 SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRN 245
           SHT+LL+Q  PR ++RT+ DYESV D ++ +CK++E+ L +++
Sbjct: 5   SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKKS 47



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 17/47 (36%), Positives = 36/47 (76%)
 Frame = +2

Query: 260 ITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLR 400
           +TYD+SQ+++F+D+L+D+S +++ + T  Y    + WIK+++Y ++R
Sbjct: 51  VTYDVSQVYEFLDKLSDVSMMIFNRETGQYIGRTRAWIKQQVYEMMR 97


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 KLLCLENSLIDSLMIKLIYFISEVHI*PCYLC 606
           K L +EN    SLMI  +YF +EV +   Y C
Sbjct: 175 KTLVIENKTFTSLMIGTLYFCNEVAMHISYFC 206


>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 524 KHNNFFLLYYVTQLCIFSSLHCTVFLMLSFFYNLNHSVRPL--DAIKHISFPLSNL 363
           + N+  L Y+   L +  S+   VFL+   FY+L     PL    I ++S P SN+
Sbjct: 33  RKNDMTLFYFRFLLDVILSVLVAVFLICGIFYSLFPEPLPLLQTLIFYLSLPASNI 88


>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 271 YITTLRFCRPVGRSELFSLSEIYK 342
           +IT  +F   VGR +L SLSE YK
Sbjct: 239 FITEYKFMSEVGRDDLRSLSETYK 262


>AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical
           protein H12C20.5 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 518 NNFFLLYYVTQLC-IFSSLHCTVFLMLSFFYNLNHSVRPL 402
           N F  L++ T+   IFS  H T+ L+L +FY +   +  L
Sbjct: 110 NRFCALFFPTKYSKIFSVSHTTIILILIYFYRIAKKIYEL 149


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 260 ITYDISQLFDFVDQLADLSCLVYQKSTNT 346
           +TYD+ +LFD+V++L DLS L     T T
Sbjct: 389 LTYDL-RLFDYVEKLKDLSSLKNIVETTT 416


>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 560 NLIIKESIREFSKHNNFFLLYYVTQLCIFSSLHCTVFLMLSFFYN 426
           ++++  ++R F K ++FF L++VT  C F   +C      + F N
Sbjct: 22  HILVLITVRRFMKGSSFFFLFFVTG-C-FDVYYCYTLTTYNIFKN 64


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 257  WCIRVSPFQMFLIYFTHTLHAVVDAFVV*VSPGFGPRTGLHQQNCVTHV*RIFKILIK 84
            W IR+ PFQ+   Y      A V   +  ++       G HQQN +     +FKILIK
Sbjct: 863  WVIRLGPFQLTQKYINSENSAAVT--LANLAMSIPIECGRHQQNQLA----LFKILIK 914


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 257  WCIRVSPFQMFLIYFTHTLHAVVDAFVV*VSPGFGPRTGLHQQNCVTHV*RIFKILIK 84
            W IR+ PFQ+   Y      A V   +  ++       G HQQN +     +FKILIK
Sbjct: 901  WVIRLGPFQLTQKYINSENSAAVT--LANLAMSIPIECGRHQQNQLA----LFKILIK 952


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 257  WCIRVSPFQMFLIYFTHTLHAVVDAFVV*VSPGFGPRTGLHQQNCVTHV*RIFKILIK 84
            W IR+ PFQ+   Y      A V   +  ++       G HQQN +     +FKILIK
Sbjct: 863  WVIRLGPFQLTQKYINSENSAAVT--LANLAMSIPIECGRHQQNQLA----LFKILIK 914


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,951
Number of Sequences: 27780
Number of extensions: 293780
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)