Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0178
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1F0H6 Cluster: Putative uncharacterized protein precur...    33   6.9  
UniRef50_Q6JCT2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    32   9.1  

>UniRef50_Q1F0H6 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium oremlandii OhILAs|Rep:
           Putative uncharacterized protein precursor - Clostridium
           oremlandii OhILAs
          Length = 302

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 411 YIMFPLAKLVCSDIYNYNSYWTFFMDFEDKVIDHI 307
           ++  P+ KLV S IYNYN Y+TF    E+  I  I
Sbjct: 234 FLQAPM-KLVGSKIYNYNEYYTFIYSHEEGNITRI 267


>UniRef50_Q6JCT2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=14; Aleyrodidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Aleurodicus dispersus
          Length = 318

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 23/78 (29%), Positives = 42/78 (53%)
 Frame = -3

Query: 510 LLQVFNTKIEVFSNLWSEVFYSVLE*TNGN*MIYIMFPLAKLVCSDIYNYNSYWTFFMDF 331
           +LQ F+  I++FS   +  F S       N +IY MFPL  ++CS +  +  Y  F+ +F
Sbjct: 46  ILQPFSDAIKLFSKEMNLNFKS-------NYIIYYMFPLLNIICS-LMMWMIY-PFYWNF 96

Query: 330 EDKVIDHILLFFLVSVNI 277
                + ++L  ++S+N+
Sbjct: 97  NFNKFNILMLMSMMSINM 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,923,893
Number of Sequences: 1657284
Number of extensions: 8776035
Number of successful extensions: 16181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16179
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)